PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00802.1.g00210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GATA | ||||||||
Protein Properties | Length: 644aa MW: 69889.2 Da PI: 9.8805 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.9 | 1.4e-18 | 421 | 455 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+C ttkTp+WR gp+g+ tLCnaCGl+y kg+ Zmw_sc00802.1.g00210.1.am.mk 421 CSHCSTTKTPQWRAGPRGPGTLCNACGLRYTDKGS 455 ******************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.123 | 415 | 454 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 8.0E-17 | 415 | 470 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 8.55E-15 | 417 | 477 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 6.2E-15 | 419 | 454 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.98E-18 | 420 | 477 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 421 | 446 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 3.3E-16 | 421 | 455 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 644 aa Download sequence Send to blast |
MVPQQTDEPR RRLSWKARPA VTPYVFRGDA RAATTTRTPL RRVSQKESRH TSRSHAGPAT 60 HDDFRTLPLQ VAATRMVFLN RGPLLLLRGT RAVVPPANFD DAHDYLDDDD VPVLPLQRKR 120 GHRRYPCQPR GRLARGGLSC PDDELNKVVP VEYFDFDKFP ADNTPDDVLG LDGSALSETS 180 GHAAPTSALP TASDSAGPCP VLDGAAATGF VPPFPQPGLV DVLDIDSSPP LPDELSCLVA 240 TFFEPSWPAQ HTLYGVIPDL APPLPVQDSE SLNCSIATCT VPLFPALDVA SRSAPLLPAQ 300 HAAAGAVVPD TAPPLRAHDT VPSAGPPATC STSSGCMSSM PWEHESAPSV VPSPIAATSV 360 VPRKQRHRSV TRRNPTWLPK SQFYEKPPAA PRAAPSSLKA GGNDKPLVAK RRRNRERDRV 420 CSHCSTTKTP QWRAGPRGPG TLCNACGLRY TDKGSLLETY RPTTSPSFDS GKHSNRQSKA 480 AKIMEKAELA KVMDDTYRRR LSESTPARRR INKLRRVQHS GSLTLTSLSR GREEALLRPA 540 GRARRIHGAL EPSRDRRQSA RTRAYPFCDF ACGLFIEPRP EAGKPSQAMP SKAGEQLQLV 600 TASKQPIEGG RTCVVAFAVS GLRYAATPQS LAFLMEQDHI SADV |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP20691 | 3 | 7 |