PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00801.1.g00170.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 1548aa    MW: 165378 Da    PI: 9.6662
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00801.1.g00170.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.82.5e-20708763156
                                   TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   +++ +++t++q++eLe++F+++++p++++r eL+k+l+L+ +qVk+WFqNrR+++k
  Zmw_sc00801.1.g00170.1.am.mk 708 KKRYHRHTPQQIQELEAVFKECPHPDEKQRMELSKRLNLEIQQVKFWFQNRRTQMK 763
                                   688999***********************************************999 PP
2START111.99.6e-3690910974163
                                    HHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT CS
                         START    4 eeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqW 72  
                                    ++a++elvk+ + ++p+W   +     + +n de+ + f++  +     + +ea r+ gvv+  +++lv +l+d + +W
  Zmw_sc00801.1.g00170.1.am.mk  909 LAAMEELVKLSQMDAPLWLPGPdgsgfDTLNLDEYHRAFARVFGpsldgYVSEATREAGVVISSSVDLVDSLMDAS-RW 986 
                                    789************************************77555********************************.** PP

                                    -TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE......... CS
                         START   73 detla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvd......... 131 
                                    +e+++    +a+t++ issg      g +qlm aelq+lsplvp R+ vf+R+++q+ +g+w+++dvSvd         
  Zmw_sc00801.1.g00170.1.am.mk  987 SEMFPcivaRASTTDIISSGmggtrsGSIQLMHAELQVLSPLVPiREMVFLRFCKQHADGVWAVADVSVDailrpdghh 1065
                                    *********************************************************************9555555543 PP

                                    -TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS
                         START  132 seqkppesssvvRaellpSgiliepksnghsk 163 
                                    + q++   ++++ ++llpSg++++++ ng+sk
  Zmw_sc00801.1.g00170.1.am.mk 1066 HSQHNGGAAGYMGCRLLPSGCIVQDMNNGYSK 1097
                                    444444499*********************87 PP
3START30.86.6e-1112321274163205
                                    EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                         START  163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 
                                    +vtwv h+++++   h+l+r+l++sg+a ga++w+a lqrqce
  Zmw_sc00801.1.g00170.1.am.mk 1232 RVTWVVHAEYDEVAMHQLYRPLLRSGQALGARRWLASLQRQCE 1274
                                    59****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.29E-21690765IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-22695765IPR009057Homeodomain-like
PROSITE profilePS5007117.864705765IPR001356Homeobox domain
SMARTSM003891.6E-19706769IPR001356Homeobox domain
PfamPF000467.5E-18708763IPR001356Homeobox domain
CDDcd000865.20E-19708765No hitNo description
PROSITE patternPS000270740763IPR017970Homeobox, conserved site
PROSITE profilePS5084830.1178971278IPR002913START domain
SuperFamilySSF559611.61E-179011097No hitNo description
CDDcd088753.91E-859011274No hitNo description
SMARTSM002341.4E-199061153IPR002913START domain
PfamPF018526.0E-289091097IPR002913START domain
PfamPF018524.8E-712321274IPR002913START domain
SuperFamilySSF559615.22E-1412921516No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1548 aa     Download sequence    Send to blast
MALTGMPMPL PQITSLEVTV VSGESVLLRS GRTLSRGAHT VVRTVSSSAV THVNADADCG  60
GYPRWNETLR VELPAGARGI DVEICRTNGG RAGEPVAATR VPVADFSVGP PGHLHCLSYR  120
LYDAGGAQGR NGIVNITVKR LGGEGRKASL QVPGMGKAVD AGASSCYSVG DQGTVPASGV  180
AIGYPVGVDF SATRRADAGD KGCSSQPYPP LTRLRRVHDD GTGWRGAFAL FRQRAGLMRL  240
RTPRRALKVA TESGRSWLAS CSSRPIIHQS VYVHCRSAGM RSATTHFARD ESTRPSRAFG  300
LGWVARRVGR HGTGAAAWLR WVGAVRQYPC LLLRSHGTTS VLRQTPAKPP PLPRTTCRTF  360
RRSLSPVPRA FVPPVRSRCR GRFSCLQTSF LHLPLRFAVV LALLHTGRRC WSPVKLICHC  420
QICDGVKVSN RAAAAGIPRP RPMQACSGTL HPSGGGQDPF DSRRPSSGSA PLVFLLQSVR  480
FLQPFFFISF IYLLRSLARR RLFTCPGLPA LSTCLLLPAI APAGLPSWVP PSFFFVLSYF  540
GSLLFVRRAR RAVGEVVVVS VRGITIQKGR HSRRLGRRRR RLFSMSFGGG MFDGAGAGVF  600
SYDASGGGAG THNPGLLSAA PPVAEHGAGW FASPGLSLGL QTNMDGGQLG DVSRLGLMGS  660
GGNGSVGDGD SMGRGREDEN DSRSGSDNLD GASGDELDPD NSNPRKKKKR YHRHTPQQIQ  720
ELEAVFKECP HPDEKQRMEL SKRLNLEIQQ VKFWFQNRRT QMKTQIERHE NALLRQENDK  780
LRADNMTIRE AVRNPTCGTC GGAAVLGEVS LEEQHLRIEN ARLKDELDRV CAIAGKFLGR  840
PGCSGLELGV GANGFGLGLL GASSLPPIPD LMGSSSALRL PAGIGGLDGA MHGGAADGVD  900
RAVLLELGLA AMEELVKLSQ MDAPLWLPGP DGSGFDTLNL DEYHRAFARV FGPSLDGYVS  960
EATREAGVVI SSSVDLVDSL MDASRWSEMF PCIVARASTT DIISSGMGGT RSGSIQLMHA  1020
ELQVLSPLVP IREMVFLRFC KQHADGVWAV ADVSVDAILR PDGHHHSQHN GGAAGYMGCR  1080
LLPSGCIVQD MNNGYSKDAH SSALVRVAVC CASSFVCVVS LVGRGYVNPW PAPSELRAAP  1140
APRRACDSNV CGACAPHRLS GCGMPYAVDR SRRTPLAASL LPPSRVRLPA ASRAAPDLLH  1200
LPPPLPPCPR SGARQVAVAT AVTAAHGIWG LRVTWVVHAE YDEVAMHQLY RPLLRSGQAL  1260
GARRWLASLQ RQCEYFAILS SNSLPARDHA VGRRSMLKLA QRMTDNFCAG VCASAAQKWR  1320
RLDEWRGDEG GCAAGAGDGE EKVRMMARQS VGGPGEPPGV VLSATTSVRL QATSPQRVFD  1380
YLRDEQRRGE WDVLANSEAM QEMDHIAKGQ HHGNAVSLLR PNATSGNQNN MLILQETCTD  1440
SSGSLVVYAP VDVQSMHVVM NGGDSAYVSL LPSGFAILPD GHGPPSSNPA EGSPSGSPGS  1500
LVTVAFQILV NSLPTARLAV ESVSTVSSLL SCTVQKIKAA LQASVVSP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1572579RRLGRRRR
2704709RKKKKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105125.20.0outer cell layer 3
SwissprotQ7Y0V70.0ROC6_ORYSJ; Homeobox-leucine zipper protein ROC6
STRINGGRMZM2G116658_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120337116