PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00800.1.g00070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | YABBY | ||||||||
Protein Properties | Length: 78aa MW: 8776.83 Da PI: 9.9196 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 38.6 | 3.8e-12 | 25 | 71 | 91 | 137 |
YABBY 91 sastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeei 137 s+s++ + ++ + +++ ++++ + r PekrqrvPsaynrfi i Zmw_sc00800.1.g00070.1.sm.mkhc 25 SSSAKFRLPMMYSAQNDLLQEQALAARAPEKRQRVPSAYNRFINGHI 71 3444555555555555555555669******************9776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.6E-10 | 23 | 71 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 78 aa Download sequence Send to blast |
ENIRPQGTIN GTSRDQFDHL EFGSSSSAKF RLPMMYSAQN DLLQEQALAA RAPEKRQRVP 60 SAYNRFINGH IIQTSILG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002442565.1 | 3e-24 | protein YABBY 6 | ||||
TrEMBL | C5YSF3 | 7e-23 | C5YSF3_SORBI; Uncharacterized protein | ||||
STRING | Sb08g022030.1 | 1e-23 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1394 | 37 | 121 |