PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00799.1.g00060.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 275aa    MW: 30733.3 Da    PI: 7.455
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00799.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.2e-1572115146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rgr T++E+  ++++++q+G++ W++Iar+++ gRt++++k++w++
  Zmw_sc00799.1.g00060.1.am.mk  72 RGRITADEERVILELHAQWGSR-WSRIARCLP-GRTDNEIKNFWRT 115
                                   899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575133No hitNo description
Gene3DG3DSA:1.10.10.602.3E-95278IPR009057Homeodomain-like
SuperFamilySSF466891.5E-1952121IPR009057Homeodomain-like
PROSITE profilePS500904.315366IPR017877Myb-like domain
PROSITE profilePS5129420.87767121IPR017930Myb domain
SMARTSM007175.1E-1371119IPR001005SANT/Myb domain
PfamPF002498.5E-1372115IPR001005SANT/Myb domain
CDDcd001675.98E-1076115No hitNo description
Gene3DG3DSA:1.10.10.602.5E-1779117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MHGDRSVEVD GKSTAWSERG VNHLLLVLLL CSCVRALLVV DVRPCCVRAG LKRTGKSCRL  60
RWVNYLHPGL RRGRITADEE RVILELHAQW GSRWSRIARC LPGRTDNEIK NFWRTRTRKK  120
ALEHRRNTSN GNTATASSLS SSSSAISFGS PPNRGWSSSP LVTEAPPQGR SSRDDEAELE  180
ETSTTTAASQ PQHQQQQLEQ KHCYTMDDQL WNEMEAASAG YVADSCGGAG HDHGGAVVAV  240
ETPPSMPSPV WEFCSDYCSL WRIDDEEYYK MRLDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-165312140108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680579.11e-73LOW QUALITY PROTEIN: transcription factor MYB59
TrEMBLK3ZD382e-72K3ZD38_SETIT; Uncharacterized protein
STRINGSi024470m3e-73(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169