PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00789.1.g00240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | TCP | ||||||||
Protein Properties | Length: 363aa MW: 37892 Da PI: 10.3387 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 109.8 | 3.9e-34 | 61 | 179 | 3 | 125 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec..eae 76 g+kdrhsk++T++g RdRRvRls+++a++f+dLqd+LGfd++sk+ieWL+++a ai l+ + + e++ Zmw_sc00789.1.g00240.1.sm.mk 61 GGKDRHSKVYTAKGIRDRRVRLSVPTAIQFYDLQDRLGFDQPSKAIEWLINAAAGAIERLPALdpaafA------AapEPG 135 78*************************************************************444330......233222 PP TCP 77 sssssasnsssgkaaksaakskksqksaasalnlak.esrakarararer 125 + + ++ s + s+ s++s+ s l+l++ +sr + +r+r Zmw_sc00789.1.g00240.1.sm.mk 136 EAATKRQQGSV------SGGSSTSETSKGSELSLSRsDSRGGGASASRDR 179 22222221111......112223333333334444444443333333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 32.452 | 62 | 120 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 3.9E-34 | 62 | 175 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MENGAAGDGA SGRPHGGAKR GRGGVMRGSE TETAWGQPPA LLPPPQGAGT ASRICRVGRG 60 GGKDRHSKVY TAKGIRDRRV RLSVPTAIQF YDLQDRLGFD QPSKAIEWLI NAAAGAIERL 120 PALDPAAFAA APEPGEAATK RQQGSVSGGS STSETSKGSE LSLSRSDSRG GGASASRDRD 180 VTVASTSTQA ASFTELLTGA AEHRQAWQPQ PNVSPAATHT EKGANGLSTH VFSAPTVVKF 240 GNAPPFGMVP AQPLNFPTPV EMPHFSLAHH ALAAASAPAG DYNFNFSVSS GFLGANRGTL 300 QSNPQKNFSG HHQQQLQRLE GQFLFGYAAA AAHPSSENQL NASAAIQLWD GFRHPGMKEK 360 SKN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-25 | 67 | 121 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 4e-25 | 67 | 121 | 1 | 55 | Putative transcription factor PCF6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00006 | PBM | Transfer from 493022 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008644443.1 | 1e-164 | transcription factor PCF6 | ||||
Swissprot | Q10CE8 | 2e-94 | PCF6_ORYSJ; Transcription factor PCF6 | ||||
TrEMBL | A0A1D6GG32 | 1e-163 | A0A1D6GG32_MAIZE; Transcription factor TCP2 | ||||
STRING | GRMZM2G089361_P01 | 1e-164 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3094 | 32 | 71 |