PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00787.1.g00030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C3H | ||||||||
Protein Properties | Length: 98aa MW: 10132.3 Da PI: 5.0376 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.5 | 4.1e-12 | 60 | 84 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG C++G +CkF+H+p Zmw_sc00787.1.g00030.1.sm.mk 60 EPDCSYYMRTGLCRFGMTCKFNHPP 84 799********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 7.1E-5 | 57 | 84 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.619 | 57 | 85 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-9 | 60 | 84 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-6 | 61 | 85 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.8E-5 | 63 | 84 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
MAALSAGAGA GGGGGEGSSS AAAASATIET HGVHEVAEAM WQMNLGEAAE SGPYPERVGE 60 PDCSYYMRTG LCRFGMTCKF NHPPDRKLLD GLMKHSLD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001141157.1 | 2e-31 | Zinc finger CCCH domain-containing protein 33 | ||||
Swissprot | Q2R4J4 | 7e-30 | C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63 | ||||
TrEMBL | A0A3L6Q1A7 | 2e-30 | A0A3L6Q1A7_PANMI; Zinc finger CCCH domain-containing protein 63 isoform X1 | ||||
TrEMBL | I1R036 | 1e-30 | I1R036_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA11G0112800.1 | 2e-31 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP25763 | 4 | 5 |
Publications ? help Back to Top | |||
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