PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00774.1.g00180.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HSF

Protein Properties

Length: 283aa MW: 30796.6 Da PI: 8.2477

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00774.1.g00180.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	91.9	7.4e-29	12	132	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT......TEEE---SSBTTTT.. CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY......gFkkvkdeekksks.. 74 F+ k+y ++ed+ ++ +i w + +nsfvv d+ f++++Lp +Fkh+nf+SFvRQLn+Y F+ ++ ++++++ Zmw_sc00774.1.g00180.1.am.mk 12 FVWKTYMMVEDPGTDGVIGWGRANNSFVVADPFVFSQTLLPAHFKHNNFSSFVRQLNTYvrppalRFRFIRLLHAQNSEvf 92 9******************999*******************************7776666999999999877788 PP ...........XTTSEEEEESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 75 ...........kekiweFkhksFkkgkkellekikrkkse 103 +++ weF+h sF +g+++ll++i r+ s+ Zmw_sc00774.1.g00180.1.am.mk 93 rstdqqgfrkvDPDRWEFAHASFLRGQTHLLRNIVRRGSS 132 8888777665449*********************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	2.4E-39	8	129	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	1.2E-34	9	129	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.5E-28	10	129	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	9.4E-12	12	35	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.0E-25	12	129	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.4E-12	50	62	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.4E-12	63	75	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MAASGCGAAA PFVWKTYMMV EDPGTDGVIG WGRANNSFVV ADPFVFSQTL LPAHFKHNNF 60 SSFVRQLNTY VRPPALRFRF IRLLHAQNSE VFRSTDQQGF RKVDPDRWEF AHASFLRGQT 120 HLLRNIVRRG SSAGNGGGKR AKDALPAADG DDMAMVTTEV VRLKQEQRAI DDRVASMWRR 180 VQETERRPKQ MLAFLLKVVG DRDRLHRLVG DTAAAPDARG NEAAAEVGGE KRARLLLDGD 240 VGAFGPDAAD FAGFYGGGED ALGDVAVDAG GGCSFAFGVD TGY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-21	5	129	17	129	Heat shock factor protein 1
5d5v_B	1e-21	5	129	17	129	Heat shock factor protein 1
5d5v_D	1e-21	5	129	17	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004965592.1	1e-126	heat stress transcription factor C-2b
Swissprot	Q0DBL6	1e-109	HFC2B_ORYSJ; Heat stress transcription factor C-2b
TrEMBL	A0A0A9DRA1	1e-131	A0A0A9DRA1_ARUDO; Uncharacterized protein
STRING	GRMZM2G118047_P01	1e-121	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4471	34	70