PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00769.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | G2-like | ||||||||
Protein Properties | Length: 404aa MW: 43072.8 Da PI: 8.6108 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.7 | 9.6e-32 | 265 | 320 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++ LGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Zmw_sc00769.1.g00010.1.am.mk 265 KARRCWSPELHRRFVNALQILGGAQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 320 68****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.46E-17 | 262 | 323 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.69 | 262 | 322 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-28 | 263 | 323 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.1E-26 | 265 | 320 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.1E-7 | 267 | 318 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MSSSSPSDLT LDYKPNGGAY AAIPKQQQAP PLVDGHHLTT EPASQKLREF LARLEEERLK 60 IDAFKRELPL CMQLLNHAME AYKQQLEAYQ MGSQQAVATR PLVLEEFIPL KNIGIDAVTD 120 KPGNPPSEKA TWMESAQLWN GPAADTAAKG PQTPKERSEH PLPIDTLGTL DGRRSGGGGG 180 AFLPFAKDKS AVPGAATALP ELALAPAEKD AVAEVDRKPP YLDAGGGGNN GVLGALRDTQ 240 NGGVKPTSAA PEGQASPAPP QTHRKARRCW SPELHRRFVN ALQILGGAQV ATPKQIRELM 300 KVDGLTNDEV KSHLQKYRLH TRRPPAPPNP ATAAPQLVVL GGIWVPPEYA AQGAAPAIYG 360 AHPATQPHYT AAVAAQEYYP SPAAVHHLQH HPATAMLHRA AAAP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-14 | 265 | 318 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-14 | 265 | 318 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 3e-14 | 265 | 318 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-14 | 265 | 318 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-14 | 265 | 318 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-14 | 265 | 318 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-14 | 265 | 318 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-14 | 265 | 318 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-14 | 265 | 318 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-14 | 265 | 318 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-14 | 265 | 318 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-14 | 265 | 318 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may play a role in regulatory networks controlling development and metabolism. {ECO:0000250|UniProtKB:Q6Z869}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025819732.1 | 0.0 | transcription factor NIGTH1 | ||||
Swissprot | Q5VRW2 | 1e-143 | NOH1_ORYSJ; Transcription factor NIGTH1 | ||||
TrEMBL | A0A3L6SLE0 | 0.0 | A0A3L6SLE0_PANMI; Putative transcription factor GLK2 | ||||
STRING | Sb03g004090.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9773 | 33 | 38 |
Publications ? help Back to Top | |||
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