PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00767.1.g00220.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HB-other

Protein Properties

Length: 665aa MW: 71052.5 Da PI: 10.8848

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00767.1.g00220.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	26.5	1.1e-08	181	222	2	43
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterq 43 rk+ +++k+q +Lee F+++++++ ++++ LA++l+L+ rq Zmw_sc00767.1.g00220.1.am.mk 181 RKKLRLSKDQAAVLEESFKEHNTLNPKQKAALATQLNLKPRQ 222 788899*********************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	3.5E-24	17	147	IPR006712	HD-ZIP protein, N-terminal
Gene3D	G3DSA:1.10.10.60	9.7E-10	165	222	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.29E-7	169	223	IPR009057	Homeodomain-like
CDD	cd00086	1.07E-6	181	222	No hit	No description
Pfam	PF00046	4.3E-6	181	222	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 665 aa Download sequence Send to blast
MMVNTSRGDE QYGGRHDHSL GLSLSLGIAT AAAPVEPTPP EQHQQKRAPI SPHFASQQPQ 60 QCWNGFSNGF FFSPSSGTDR SLFERKQQPQ QPAAACHGHE MPFLRGIDVN RAPGGEVSRR 120 GSCSEDEEPG ASSPNSTLSS LSGKRGAAAT TSGGGEGDLT PRAAGGGSDD EDSGAGGGGS 180 RKKLRLSKDQ AAVLEESFKE HNTLNPKQKA ALATQLNLKP RQLIAAPHPY ARIPPPPTTL 240 TMCPSCERVA DAARTAPAGP WGPVPVRPVF VDGPARRSKD AMAIVLQVRI KIQRVGAGGA 300 RSMIRPLVGE ATRSWLDPGV RLLTTPAGLI NQREAASALL PSKWITGAGD RIRRCLTRGA 360 HALRLNLNSG AGGRKRWPQG TACSQPPAFT RALLGFSVAA KKLDDFAPNS SMSARSTSDD 420 AGDDTLDGGM TGGPVRQRDN GVETATAAEC VLAPPLPIVL TPTTAPIVPS RPAPTSRENP 480 APLPHPPLLC YQDPLMPHRM PMSATSSKIA GEVNLIGTGY PFPFSPRYFS LQGCSRRSYA 540 IGSVWPGIES HARLNGINVD KGVARIRRPR TMPSHMRGSN LHAWSSFICS GSDLGVYIHP 600 ARPPKIPPLP AKRFSPRPPS RRGLTSPSFP RTDRKRNATN IPRNRAREES MHRDEREPLL 660 FRAAA

Sequence ? help Back to Top

Protein Sequence Length: 665 aa Download sequence Send to blast

MMVNTSRGDE QYGGRHDHSL GLSLSLGIAT AAAPVEPTPP EQHQQKRAPI SPHFASQQPQ  60
QCWNGFSNGF FFSPSSGTDR SLFERKQQPQ QPAAACHGHE MPFLRGIDVN RAPGGEVSRR  120
GSCSEDEEPG ASSPNSTLSS LSGKRGAAAT TSGGGEGDLT PRAAGGGSDD EDSGAGGGGS  180
RKKLRLSKDQ AAVLEESFKE HNTLNPKQKA ALATQLNLKP RQLIAAPHPY ARIPPPPTTL  240
TMCPSCERVA DAARTAPAGP WGPVPVRPVF VDGPARRSKD AMAIVLQVRI KIQRVGAGGA  300
RSMIRPLVGE ATRSWLDPGV RLLTTPAGLI NQREAASALL PSKWITGAGD RIRRCLTRGA  360
HALRLNLNSG AGGRKRWPQG TACSQPPAFT RALLGFSVAA KKLDDFAPNS SMSARSTSDD  420
AGDDTLDGGM TGGPVRQRDN GVETATAAEC VLAPPLPIVL TPTTAPIVPS RPAPTSRENP  480
APLPHPPLLC YQDPLMPHRM PMSATSSKIA GEVNLIGTGY PFPFSPRYFS LQGCSRRSYA  540
IGSVWPGIES HARLNGINVD KGVARIRRPR TMPSHMRGSN LHAWSSFICS GSDLGVYIHP  600
ARPPKIPPLP AKRFSPRPPS RRGLTSPSFP RTDRKRNATN IPRNRAREES MHRDEREPLL  660
FRAAA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	179	185	SRKKLRL

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2587	38	89