PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00758.1.g00280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 237aa MW: 26677.5 Da PI: 10.5279 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.6 | 8.1e-15 | 4 | 53 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd l +v+q+G++ W++++++m+ + R +k+c +rw +yl Zmw_sc00758.1.g00280.1.am.mk 4 RQRWRPEEDAVLRAYVRQYGPREWHLVSQRMNvaLDRDAKSCHERWKNYL 53 89**********************************************97 PP | |||||||
2 | Myb_DNA-binding | 37.3 | 6.4e-12 | 59 | 103 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ T+eE+ l +++ +++G++ Wk+Ia++++ gRt+k + +w + Zmw_sc00758.1.g00280.1.am.mk 59 KGSLTEEEQRLVIRLQAKHGNK-WKKIAAEVP-GRTAKRLGKWWEVF 103 6788******************.*********.*****999999766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.123 | 1 | 53 | IPR017930 | Myb domain |
SMART | SM00717 | 9.9E-12 | 3 | 55 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.42E-21 | 4 | 98 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.90E-9 | 6 | 53 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-20 | 6 | 60 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 1.1E-13 | 7 | 67 | No hit | No description |
PROSITE profile | PS51294 | 23.375 | 54 | 108 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-10 | 58 | 106 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-15 | 61 | 102 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.08E-8 | 63 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MKERQRWRPE EDAVLRAYVR QYGPREWHLV SQRMNVALDR DAKSCHERWK NYLRPGIKKG 60 SLTEEEQRLV IRLQAKHGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQQRE LRGSRRPPPE 120 PSPDERGRYE WLLENFAEKL VNERLQPTPL LMAAPVLPPW LSSSATGHTV VTQPPSPSVT 180 LSLASATTPP ATVPPWMPAE RGAAADAFGF TTPQPPPAGA PTPQPGVAVV EGQALAE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-15 | 7 | 100 | 7 | 97 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-15 | 7 | 100 | 7 | 97 | C-Myb DNA-Binding Domain |
1msf_C | 1e-15 | 7 | 100 | 7 | 97 | C-Myb DNA-Binding Domain |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for normal cell differentiation. Interacts directly with asymmetric leaves 2 (AS2) to repress the knox homeobox genes. {ECO:0000269|PubMed:10102816, ECO:0000269|PubMed:12750468, ECO:0000269|PubMed:9655808}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025805303.1 | 1e-102 | protein rough sheath 2 | ||||
Swissprot | Q9S7B2 | 1e-100 | RS2_MAIZE; Protein rough sheath 2 | ||||
TrEMBL | A0A317YB85 | 1e-102 | A0A317YB85_MAIZE; Protein rough sheath 2 | ||||
STRING | Traes_5BS_E635B0A281.2 | 1e-101 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5190 | 36 | 54 |