PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00758.1.g00210.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 804aa MW: 88883.4 Da PI: 6.4335

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00758.1.g00210.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	355.5	8.2e-109	423	794	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 l++lL++cA+av+++d + a++lL++++++asp+gd++qRla++f+e+L+arla+++s +y++l +++ts + l+a+ Zmw_sc00758.1.g00210.1.am.mk 423 LRTLLIHCAQAVATDDRRSATELLKQIKQHASPQGDATQRLAHCFAEGLQARLAGTGSMVYQSLMAKRTS---AVALLQAY 500 6789**********************************************************999998...899* PP GRAS 82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeelee 160 +l+ + + k++++ N +I +a g++++Hi+D++i +G+QWp++l++++ R++gpp++ iTg++ p++g +e++ee Zmw_sc00758.1.g00210.1.am.mk 501 QLYMAAICFKKVAFIFSNYTIFNASLGKKKIHIVDYGIHYGFQWPCFLKQISGREGGPPEVTITGIDLPQPGfrPTERIEE 581 *******************************************************************9***** PP GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241 tg+rL+++A+e+gvpf++++++a+++e+++ e+L+++p+E+l+Vn+++q ++l+desv +es+rd vL+ +++++P+ +++ Zmw_sc00758.1.g00210.1.am.mk 582 TGRRLSNYAREFGVPFKYHAIAASKMESVRKEDLNIDPDEVLIVNCMYQFKNLMDESVVIESPRDVVLNNIRKMQPHTFIH 662 ***************************************************************************** PP GRAS 242 veqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322 + + + +++ F++rf eal yysalfd l+++ pr+s++r+ +E+ ++gr++ nv+aceg++r+er et+++W+ r ++a Zmw_sc00758.1.g00210.1.am.mk 663 AIVNGSFSAPFFVTRFREALFYYSALFDVLDTTTPRDSDQRMLIEQNIFGRSALNVIACEGTDRVERPETYKQWQVRNQRA 743 ***************************************************************************** PP GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 G+k++pl+ ++++ ++ ++ ++ + + ++ ++++l++gWk+r L+++S W Zmw_sc00758.1.g00210.1.am.mk 744 GLKQLPLNRETVEIVRGKVKDCYHKDFVIDIDHHWLLQGWKGRILFAISTW 794 *******************889*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.987	397	775	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.8E-106	423	794	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 804 aa Download sequence Send to blast
MQWKAGEMSP GPKPPLVGNG NAVECWRKVD TDKIKRCLEV ERDLPNLQGP GYDIDVSTTI 60 HGASIGHEIV IQTEYVYQRT VSSSLFVWSR TQVDGVERLI LFRFNLPRIS AVSKSPFPPP 120 PSRNLPLPVS TPCPPAAYKS TPSPLSLSSS RARPRPATHA AAMGSSYDLY QSPGADDPSL 180 YLYLSDLVPD SPSAYLDLPP TPHHEQQQPP PVPTAATDDG AAAGSPEDLV LPYISRMLME 240 DDIEDKFFYD YPDNPSLLQA QQPFLEILSN SDDTTTTTTT TSSSGGDHHG DPSPTSSSSD 300 GASAPAPSPA PPVAPAVTLS VKEERVDAAP GNGVGRGRKN PYDHDELEVE GGRSSKQSAV 360 QGEDDATRDM LDRVMMPSHE ACVLQMQQLR IAMQEEAAKN EAGGKAGNGK AKGRRGGRDV 420 VDLRTLLIHC AQAVATDDRR SATELLKQIK QHASPQGDAT QRLAHCFAEG LQARLAGTGS 480 MVYQSLMAKR TSAVALLQAY QLYMAAICFK KVAFIFSNYT IFNASLGKKK IHIVDYGIHY 540 GFQWPCFLKQ ISGREGGPPE VTITGIDLPQ PGFRPTERIE ETGRRLSNYA REFGVPFKYH 600 AIAASKMESV RKEDLNIDPD EVLIVNCMYQ FKNLMDESVV IESPRDVVLN NIRKMQPHTF 660 IHAIVNGSFS APFFVTRFRE ALFYYSALFD VLDTTTPRDS DQRMLIEQNI FGRSALNVIA 720 CEGTDRVERP ETYKQWQVRN QRAGLKQLPL NRETVEIVRG KVKDCYHKDF VIDIDHHWLL 780 QGWKGRILFA ISTWVANDAG CPYF

Sequence ? help Back to Top

Protein Sequence Length: 804 aa Download sequence Send to blast

MQWKAGEMSP GPKPPLVGNG NAVECWRKVD TDKIKRCLEV ERDLPNLQGP GYDIDVSTTI  60
HGASIGHEIV IQTEYVYQRT VSSSLFVWSR TQVDGVERLI LFRFNLPRIS AVSKSPFPPP  120
PSRNLPLPVS TPCPPAAYKS TPSPLSLSSS RARPRPATHA AAMGSSYDLY QSPGADDPSL  180
YLYLSDLVPD SPSAYLDLPP TPHHEQQQPP PVPTAATDDG AAAGSPEDLV LPYISRMLME  240
DDIEDKFFYD YPDNPSLLQA QQPFLEILSN SDDTTTTTTT TSSSGGDHHG DPSPTSSSSD  300
GASAPAPSPA PPVAPAVTLS VKEERVDAAP GNGVGRGRKN PYDHDELEVE GGRSSKQSAV  360
QGEDDATRDM LDRVMMPSHE ACVLQMQQLR IAMQEEAAKN EAGGKAGNGK AKGRRGGRDV  420
VDLRTLLIHC AQAVATDDRR SATELLKQIK QHASPQGDAT QRLAHCFAEG LQARLAGTGS  480
MVYQSLMAKR TSAVALLQAY QLYMAAICFK KVAFIFSNYT IFNASLGKKK IHIVDYGIHY  540
GFQWPCFLKQ ISGREGGPPE VTITGIDLPQ PGFRPTERIE ETGRRLSNYA REFGVPFKYH  600
AIAASKMESV RKEDLNIDPD EVLIVNCMYQ FKNLMDESVV IESPRDVVLN NIRKMQPHTF  660
IHAIVNGSFS APFFVTRFRE ALFYYSALFD VLDTTTPRDS DQRMLIEQNI FGRSALNVIA  720
CEGTDRVERP ETYKQWQVRN QRAGLKQLPL NRETVEIVRG KVKDCYHKDF VIDIDHHWLL  780
QGWKGRILFA ISTWVANDAG CPYF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-44	427	794	8	374	GRAS family transcription factor containing protein, expressed
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006664663.2	0.0	PREDICTED: scarecrow-like protein 9, partial
Refseq	XP_015620149.1	0.0	scarecrow-like protein 34
Swissprot	O80933	1e-162	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A287QL73	0.0	A0A287QL73_HORVV; Uncharacterized protein
STRING	OBART12G16530.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297