PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00755.1.g00320.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB

Protein Properties

Length: 339aa MW: 36116.1 Da PI: 4.2993

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00755.1.g00320.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.4	1.2e-16	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT++Ed +l+ +++++G +W++ ++ g+ R++k+c++rw +yl Zmw_sc00755.1.g00320.1.sm.mk 16 RGSWTPQEDMRLIAYIQKHGHANWRALPKQAGLLRCGKSCRLRWINYL 63 89****************************99**********97 PP
2	Myb_DNA-binding	51.5	2.4e-16	69	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+e +++++ +lG++ W++Ia++++ gRt++++k+ w+++l Zmw_sc00755.1.g00320.1.sm.mk 69 RGNFTADEEETIIKLHGLLGNK-WSKIAACLP-GRTDNEIKNVWNTHL 114 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.36	11	63	IPR017930	Myb domain
SuperFamily	SSF46689	1.43E-29	13	110	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-12	15	65	IPR001005	SANT/Myb domain
Pfam	PF00249	3.4E-15	16	63	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-23	17	70	IPR009057	Homeodomain-like
CDD	cd00167	2.00E-10	18	63	No hit	No description
PROSITE profile	PS51294	24.721	64	118	IPR017930	Myb domain
SMART	SM00717	3.9E-14	68	116	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-14	69	114	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.2E-26	71	118	IPR009057	Homeodomain-like
CDD	cd00167	7.90E-11	71	114	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MGRGRAPCCA KVGLNRGSWT PQEDMRLIAY IQKHGHANWR ALPKQAGLLR CGKSCRLRWI 60 NYLRPDLKRG NFTADEEETI IKLHGLLGNK WSKIAACLPG RTDNEIKNVW NTHLKKKVAQ 120 REQKKEEGSE PISSSSASSS TTTANSSGDA GEQCGTSKEP DAADTIPPVE TDIDIYDMLV 180 DAFPAAAEPM PPSSPCSSST LTTCVVGVDD LIELPVIDIE PDIWSIIDGD GGADVPDVSG 240 ARHGDAAVPC TGAGVSTSGE AGEASDWWLA NLEKELGLWG PTEDSQAQGD TEGPGANLEM 300 GFAVALGDAE GDPVSTYFQS GPTSIELPED ESFSLTREC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	2e-27	14	118	2	105	C-Myb DNA-Binding Domain
1msf_C	2e-27	14	118	2	105	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269\|PubMed:7920701}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004953532.1	1e-142	myb-related protein Zm1
Swissprot	P20024	1e-143	MYB1_MAIZE; Myb-related protein Zm1
TrEMBL	A0A0A9HFK4	1e-146	A0A0A9HFK4_ARUDO; Uncharacterized protein
STRING	Pavir.Aa01159.1.p	1e-143	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2154	37	98

Publications ? help Back to Top
Franken P,Schrell S,Peterson PA,Saedler H,Wienand U Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38. Plant J., 1994. 6(1): p. 21-30 [PMID:7920701]