PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00755.1.g00130.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 323aa MW: 34056.7 Da PI: 5.4884

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00755.1.g00130.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.5	2.8e-14	67	118	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P+a + ++ + a+i+ A+e++k+L+ Zmw_sc00755.1.g00130.1.sm.mk 67 QRMTHIAVERNRRRQMNEYLAVLRSLMPEA---YVQRGDQASIVGGAIEFVKELE 118 79**************************...*****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.01E-18	65	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.70E-12	65	115	No hit	No description
PROSITE profile	PS50888	15.408	66	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-14	67	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-11	67	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.4E-11	72	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MSALVDALCA PSSDAALIFD PLNAASAASF LFDNAAFCDA GIALGAAPVL QHAAGAPGAS 60 KEETESQRMT HIAVERNRRR QMNEYLAVLR SLMPEAYVQR GDQASIVGGA IEFVKELEQQ 120 LQLLEAQKRT LAHHHQHYKA KPDAAAMLAG SSSASAAAST PTTCVVESAT TTTTTSNCSS 180 SVAEDAHSVD APPFARFFMY PQYVWCHQSP RELPAEDGGG RPGVADIEVS LVETHASVRV 240 MAPRRPGQLL RMVAGLQALR LPVLHLTVTT LDALALYSLS VKVEEGCGLP TADDIAAAVH 300 HVLCIIDADA VAQEMLALGA VGH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	67	78	RMTHIAVERNRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004953510.1	1e-132	transcription factor bHLH94
TrEMBL	A0A0A9CH21	1e-133	A0A0A9CH21_ARUDO; Uncharacterized protein
STRING	Pavir.Ab02502.1.p	1e-129	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3712	36	78