PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00747.1.g00160.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HB-PHD

Protein Properties

Length: 1261aa MW: 138761 Da PI: 7.067

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00747.1.g00160.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	22.4	2.1e-07	640	673	12	45
HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHH CS Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqVk 45 + L+++Fekn+yps++++e LA++lgLt qV Zmw_sc00747.1.g00160.1.sm.mkhc 640 KQKLKDHFEKNPYPSRATKESLARELGLTFIQVA 673 689**************************88885 PP
2	Homeobox	26.4	1.2e-08	864	903	13	52
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 + L+ F k++yps+++ + LA++lgLt qV+ WF+ R Zmw_sc00747.1.g00160.1.sm.mkhc 864 QKLKVQFGKDPYPSRSTLQSLAQELGLTLIQVRRWFKSTR 903 679999******************************8766 PP
3	PHD	44.7	2.9e-15	321	376	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C++Cg+ + +++++lCdg C++ fH++Cl+++l++e++p g w+C+ C +k Zmw_sc00747.1.g00160.1.sm.mkhc 321 FCAICGSkdVTLQNDIILCDGaCDRGFHQNCLNPPLRTEDIPPGdeGWFCPACACK 376 7****64445****66****************9999*****975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	6.87E-16	311	380	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	6.6E-15	317	376	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50016	11.323	319	376	IPR019787	Zinc finger, PHD-finger
SMART	SM00249	3.4E-12	321	374	IPR001965	Zinc finger, PHD-type
Pfam	PF00628	1.9E-12	321	375	IPR019787	Zinc finger, PHD-finger
CDD	cd15504	7.59E-28	321	373	No hit	No description
PROSITE pattern	PS01359	0	322	373	IPR019786	Zinc finger, PHD-type, conserved site
Gene3D	G3DSA:1.10.10.60	4.7E-9	620	687	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.268	626	697	IPR001356	Homeobox domain
SMART	SM00389	4.2E-8	629	701	IPR001356	Homeobox domain
CDD	cd00086	2.30E-9	633	695	No hit	No description
SuperFamily	SSF46689	5.99E-8	633	673	IPR009057	Homeodomain-like
Pfam	PF05920	2.3E-5	649	691	IPR008422	Homeobox KN domain
PROSITE profile	PS50071	11.823	849	909	IPR001356	Homeobox domain
SMART	SM00389	5.2E-9	851	913	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.68E-9	852	906	IPR009057	Homeodomain-like
CDD	cd00086	2.78E-9	854	904	No hit	No description
Pfam	PF00046	3.8E-6	864	903	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.8E-8	864	904	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1261 aa Download sequence Send to blast
SREYRRKRKG VRKLLNRREG RLRLAAPSTG GEQAANGRQR VTPSKVGSPN NSVRMLRSAS 60 KNMDEFLNGN TAGEQVTNGR KCVTPSNVVS PNNSARVLRS ASKNKNEAYS ELLNGGTAGQ 120 PSAVKRKSGS PLKVGSPANS ARVLHSNSKK TIESCNEPLN DSTAAHPASR KRKTGTPPKE 180 GSPKLGVRVL RSASKKDACF EPQILSTPVQ PAVRKRKSGR SAKECSPKKD YIKFYNRVRY 240 ILNQMKYEQS LILAYDGEGW KGQSLEKIRP EKELERAKAA ILQWKIKIRE AFRNMDTLLS 300 EGKHEESLFD SAGEIFSEDI FCAICGSKDV TLQNDIILCD GACDRGFHQN CLNPPLRTED 360 IPPGDEGWFC PACACKLNCI VALNELQGSE LSVHDSWEKI FPEAASSAND SKQFDASDLP 420 LCDPENNDYS RSLVEGHIVN EGRFSAKNDG KVDDLGLPSE DSEDDDFDPA GLDSSEDQKG 480 ELYSEESDFT SDSDEFCVEI AKYFGQDGTS VSPLSNFNEK NWNRASMETE LDQDVVRPIS 540 SRRKVERLDY KKLYDEAYGE ESSSSSDDEE WSGKEKLEDS ETYGSVRSAK RRSRRPSAGD 600 PISQHTPPSQ RHYASASEQH TEVRSNGSNS ASRRFGPIIK QKLKDHFEKN PYPSRATKES 660 LARELGLTFI QVATPDLFFY LQVDKWFAST RHSSRVAAAK KEKCTGNRTT ENNDGVTVDR 720 AQVRAPNDAM LAELTAGRND MVHEEVMVQN NLDGGNKEDI LLPRAETETG GYENESSDPS 780 DEKEWSGTSA SQKELQDNET DSRATSNRTK RLARRAPVQP QNNEHTPLSE QLHGSVKEQL 840 TEAPCSNGSS SEARKYHFGP IVNQKLKVQF GKDPYPSRST LQSLAQELGL TLIQVRRWFK 900 STRRYSGISA AKKGNNEKNG STTVDSIQGM ENTYGVMENP NKDRNDMVSR NLMLQINLNE 960 GSIDDIFLSQ HPSGEERVVT TPTALSRELS PPGYGPGESQ GKSASWNTGF EQGLITTPTT 1020 VSKDVVLPGY GPGESHGFCG SWNTISEQRI FMTPTNASMS MSQEVGPPGY GPGANQGKSA 1080 SWNTSSEQSA VMTPTTGPIE ACPPGFEPRE GQVNGASWTN ISKQRVDTVP STVSRPVGPP 1140 GYGPGGNQVS GASWNTSTEQ VMLTTPSTIP FEAGPPGYWS GEYQSNNASW NNSCEESVFM 1200 TRTTTLSEVS PPGYWPRENK GTGASTDVGS LKARSAEKPE LADEARKKAI ARELRRMKKF 1260 R

Sequence ? help Back to Top

Protein Sequence Length: 1261 aa Download sequence Send to blast

SREYRRKRKG VRKLLNRREG RLRLAAPSTG GEQAANGRQR VTPSKVGSPN NSVRMLRSAS  60
KNMDEFLNGN TAGEQVTNGR KCVTPSNVVS PNNSARVLRS ASKNKNEAYS ELLNGGTAGQ  120
PSAVKRKSGS PLKVGSPANS ARVLHSNSKK TIESCNEPLN DSTAAHPASR KRKTGTPPKE  180
GSPKLGVRVL RSASKKDACF EPQILSTPVQ PAVRKRKSGR SAKECSPKKD YIKFYNRVRY  240
ILNQMKYEQS LILAYDGEGW KGQSLEKIRP EKELERAKAA ILQWKIKIRE AFRNMDTLLS  300
EGKHEESLFD SAGEIFSEDI FCAICGSKDV TLQNDIILCD GACDRGFHQN CLNPPLRTED  360
IPPGDEGWFC PACACKLNCI VALNELQGSE LSVHDSWEKI FPEAASSAND SKQFDASDLP  420
LCDPENNDYS RSLVEGHIVN EGRFSAKNDG KVDDLGLPSE DSEDDDFDPA GLDSSEDQKG  480
ELYSEESDFT SDSDEFCVEI AKYFGQDGTS VSPLSNFNEK NWNRASMETE LDQDVVRPIS  540
SRRKVERLDY KKLYDEAYGE ESSSSSDDEE WSGKEKLEDS ETYGSVRSAK RRSRRPSAGD  600
PISQHTPPSQ RHYASASEQH TEVRSNGSNS ASRRFGPIIK QKLKDHFEKN PYPSRATKES  660
LARELGLTFI QVATPDLFFY LQVDKWFAST RHSSRVAAAK KEKCTGNRTT ENNDGVTVDR  720
AQVRAPNDAM LAELTAGRND MVHEEVMVQN NLDGGNKEDI LLPRAETETG GYENESSDPS  780
DEKEWSGTSA SQKELQDNET DSRATSNRTK RLARRAPVQP QNNEHTPLSE QLHGSVKEQL  840
TEAPCSNGSS SEARKYHFGP IVNQKLKVQF GKDPYPSRST LQSLAQELGL TLIQVRRWFK  900
STRRYSGISA AKKGNNEKNG STTVDSIQGM ENTYGVMENP NKDRNDMVSR NLMLQINLNE  960
GSIDDIFLSQ HPSGEERVVT TPTALSRELS PPGYGPGESQ GKSASWNTGF EQGLITTPTT  1020
VSKDVVLPGY GPGESHGFCG SWNTISEQRI FMTPTNASMS MSQEVGPPGY GPGANQGKSA  1080
SWNTSSEQSA VMTPTTGPIE ACPPGFEPRE GQVNGASWTN ISKQRVDTVP STVSRPVGPP  1140
GYGPGGNQVS GASWNTSTEQ VMLTTPSTIP FEAGPPGYWS GEYQSNNASW NNSCEESVFM  1200
TRTTTLSEVS PPGYWPRENK GTGASTDVGS LKARSAEKPE LADEARKKAI ARELRRMKKF  1260
R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	168	173	SRKRKT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor involved in the regulation of gibberrelin (GA) signaling. Binds to the 5'-GATC-3' motif of HD16/EL1 promoter. Functions as a positive regulator of GA signaling by suppressing the expression of HD16/EL1, a negative regulator of GA signaling. {ECO:0000269\|PubMed:21951842}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by gibberellin. {ECO:0000269\|PubMed:21951842}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025814926.1	0.0	uncharacterized protein LOC112892070 isoform X2
Swissprot	Q8H991	0.0	HAZ1_ORYSJ; Homeobox protein HAZ1
TrEMBL	A0A2T7DGV4	0.0	A0A2T7DGV4_9POAL; Uncharacterized protein
STRING	Pavir.Eb03127.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4393	37	68

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Wen BQ,Xing MQ,Zhang H,Dai C,Xue HW Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1. J Integr Plant Biol, 2011. 53(11): p. 869-78 [PMID:21951842]