PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00744.1.g00210.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HB-other
Protein Properties Length: 401aa    MW: 43606.6 Da    PI: 7.9755
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00744.1.g00210.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox21.44.2e-07871451056
                                     HHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
                        Homeobox  10 eqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56 
                                     +++ e+e+  ++  ++ p ++  + LA+k            ++ +qV +WFqNrR+ ++
  Zmw_sc00744.1.g00210.1.am.mkhc  87 SEVAEMEARLKQlhHSVPGRDVLQSLADKFsasperagrvAVQPKQVWNWFQNRRYSYR 145
                                     56666666666555667888888888888888888888889***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.002177151IPR001356Homeobox domain
SuperFamilySSF466891.11E-883147IPR009057Homeodomain-like
PROSITE profilePS500719.42683147IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.9E-683147IPR009057Homeodomain-like
CDDcd000863.19E-483145No hitNo description
PfamPF000461.8E-487145IPR001356Homeobox domain
PfamPF167193.6E-21209287IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
PVQAEEEHPV VRGSNPDPQS GDRFDKPATA ALRQRQHLHS LRSLTPFPSR RSDRAGGAAG  60
SHRRRREEPP MGRPPSSGAP AFRFLPSEVA EMEARLKQLH HSVPGRDVLQ SLADKFSASP  120
ERAGRVAVQP KQVWNWFQNR RYSYRAKGVR PAQQPPPPPS KMTPSGADRV QHATAASAFR  180
AAQTPAAAAG ANPGSTPSTG KGAVEGAPIE FEAKSARDGA WYDVAGFLSH RMFETGDPEV  240
RVRFSGFGAE EDEWVNVRKC VRQRSLPCEA TECVAVLPGD LILCFQEIVP LRKVCRRPET  300
DYRLQILHAS RAAAAASDVH APPREVRMES ASEEKSPAGQ EPVKQHKMMD VNTDEVTMVS  360
DQGEAAGKTA PPTPSAQAET HNNSSSDVDA EPAPVVEVDE R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A3e-28207287282SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B3e-28207287282SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A3e-28207287282SHH1 SAWADEE
4iur_B3e-28207287282SHH1 SAWADEE
4iut_A3e-28207287282SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B3e-28207287282SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A3e-28207287282SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B3e-28207287282SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A3e-28207287282SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B3e-28207287282SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956551.11e-161protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_022680276.11e-161protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_022680277.11e-161protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_022680278.11e-161protein SAWADEE HOMEODOMAIN HOMOLOG 2
SwissprotQ8RWJ72e-88SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A1D6EP151e-164A0A1D6EP15_MAIZE; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
STRINGSi030167m1e-161(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41902948