PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00743.1.g00200.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 498aa    MW: 56524.7 Da    PI: 9.6186
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00743.1.g00200.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.14.2e-102673501699
                                     EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
                              B3  16 lvlpkkfaeehggkkeesktltledesg.rsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 
                                     l ++k++a ++   ++es+++tl+ +   + W   + y rk  ++ ++ + W +Fv++n+++egD+++++ +++ ++ +
  Zmw_sc00743.1.g00200.1.am.mkhc 267 LGISKEYAFAYF--PHESTKITLQMPGMdKMWHPLF-YkRKENRKNFIMGRWMDFVRDNNVQEGDICLLEPVKEdRRST 342
                                     567788887775..5578899999988757777777.5255555578888********************876658888 PP

                                     .EEEEE-S CS
                              B3  92 lvvkvfrk 99 
                                     ++v ++r+
  Zmw_sc00743.1.g00200.1.am.mkhc 343 FTVYLLRT 350
                                     89888876 PP
2B346.85.2e-154184931997
                                     -HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
                              B3  19 pkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                                       ++a+e+     + ++t ++ ++ g++W+ ++ + +++++ +l +GW +F+++ngL+++D+++F+l+++ ++ +++v+
  Zmw_sc00743.1.g00200.1.am.mkhc 418 GVRYAAEYlP---AVGQT-VVLQRMGKTWNTQMVIHNGRRW-FLNGGWTKFARDNGLRVRDVCLFELMENeRNITMNVH 491
                                     5566666632...22334.55677*********77777766.6999**********************98788888888 PP

                                     EE CS
                              B3  96 vf 97 
                                     ++
  Zmw_sc00743.1.g00200.1.am.mkhc 492 II 493
                                     86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.9E-16245350IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-17245350IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.0E-6251351IPR003340B3 DNA binding domain
CDDcd100179.71E-16251349No hitNo description
PROSITE profilePS5086310.659252351IPR003340B3 DNA binding domain
PfamPF023623.0E-8267350IPR003340B3 DNA binding domain
SMARTSM010196.8E-6400496IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-18408493IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-16413493IPR015300DNA-binding pseudobarrel domain
CDDcd100173.95E-13417493No hitNo description
PfamPF023623.0E-13418493IPR003340B3 DNA binding domain
PROSITE profilePS5086311.448433496IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MVKNEYLNKL LSSKVDTSQK KHFKRKPDME PVDNCSYKRR QIAINISNSK SLQSCETIGS  60
KTAKGNNGGN LHIENGSVTL NIRHPKPLIV QCLGDTNHSH ILKGIEGSSH QWKDPQPLRN  120
PFKSIVMKRK KVVLGSKKVE TSTSTADYEK PVHEKCGNTS GGMMNMCANM SSQNMVWTDR  180
SYHGGKTIRM ATCTALEESD VLAENRSLEL DNLHAVPRGD YILSRTSCLS EAQKERVMAF  240
IQKTKPQITV FVSVIGKSSV QPPGPYLGIS KEYAFAYFPH ESTKITLQMP GMDKMWHPLF  300
YKRKENRKNF IMGRWMDFVR DNNVQEGDIC LLEPVKEDRR STFTVYLLRT SAMHATDGDG  360
FLRAGPYPSE SIVKMASEVH VKGELSKGKH VSAERLMHES SHESPETSDT GDPIFEIGVR  420
YAAEYLPAVG QTVVLQRMGK TWNTQMVIHN GRRWFLNGGW TKFARDNGLR VRDVCLFELM  480
ENERNITMNV HIIFREEF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797620.11e-116B3 domain-containing protein Os03g0619800-like isoform X3
TrEMBLA0A0A9EDT21e-123A0A0A9EDT2_ARUDO; Uncharacterized protein
STRINGPavir.Ia01276.1.p1e-103(Panicum virgatum)
STRINGPavir.Ib03958.1.p1e-105(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172