PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00731.1.g00320.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 415aa MW: 45787.3 Da PI: 9.9505

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00731.1.g00320.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.6	1.4e-33	105	159	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl Zmw_sc00731.1.g00320.1.am.mk 105 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 159 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.347	102	162	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.2E-32	102	160	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.97E-16	104	160	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-23	105	160	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-7	107	157	IPR001005	SANT/Myb domain
Pfam	PF14379	8.2E-25	200	246	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MAISRSPTRQ PTPSMAGPLA RNFCKTYLLL YMEASLLRTR REERELIRER SRGEGGGAAA 60 RARGRGENRM FPSKKATSAA AAVSSNDRQM CVQGDSGLVL TTDPKPRLRW TVELHERFVD 120 AVTQLGGPDK ATPKTIMRVM GVKGLTLYHL KSHLQKFRLG KQPHKEFNDH SVKDAAAMEM 180 QRNVASSSGM MGRSMNDRNH VNEAIRMQVE VQRRLHEQLE VQKHLQMRIE AQGKYMQSIL 240 EKAYQTLAAG DVMSCPAGYK SLGNQAVLDV CSLKDIGPSM GFPSLQDLHM YGGGHLDLQQ 300 QMDRSMESFF ACSDSSIGSL GKKRPNPYAA GKSPMMWGDD EQGKSDHLQM APPMIDGGID 360 VMDSISDVYG DVKPMMSGDS TGSKGFDGKL ERPSPRRRMG SPSVLGGQTR NLSYG

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MAISRSPTRQ PTPSMAGPLA RNFCKTYLLL YMEASLLRTR REERELIRER SRGEGGGAAA  60
RARGRGENRM FPSKKATSAA AAVSSNDRQM CVQGDSGLVL TTDPKPRLRW TVELHERFVD  120
AVTQLGGPDK ATPKTIMRVM GVKGLTLYHL KSHLQKFRLG KQPHKEFNDH SVKDAAAMEM  180
QRNVASSSGM MGRSMNDRNH VNEAIRMQVE VQRRLHEQLE VQKHLQMRIE AQGKYMQSIL  240
EKAYQTLAAG DVMSCPAGYK SLGNQAVLDV CSLKDIGPSM GFPSLQDLHM YGGGHLDLQQ  300
QMDRSMESFF ACSDSSIGSL GKKRPNPYAA GKSPMMWGDD EQGKSDHLQM APPMIDGGID  360
VMDSISDVYG DVKPMMSGDS TGSKGFDGKL ERPSPRRRMG SPSVLGGQTR NLSYG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-18	105	161	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-18	105	161	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-18	105	161	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-18	105	161	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269\|PubMed:14614507, ECO:0000269\|PubMed:18523061, ECO:0000269\|PubMed:25081480, ECO:0000269\|PubMed:26239308, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269\|PubMed:15592750}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025799290.1	0.0	myb family transcription factor APL
Swissprot	Q9SAK5	1e-103	APL_ARATH; Myb family transcription factor APL
TrEMBL	A0A1E5VH39	0.0	A0A1E5VH39_9POAL; Myb family transcription factor APL
STRING	Pavir.Aa03369.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2504	38	90

Publications ? help Back to Top
Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R Vascular gene expression: a hypothesis. Front Plant Sci, 2013. 4: p. 261 [PMID:23882276] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kondo Y, et al. Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells. Plant Cell, 2016. 28(6): p. 1250-62 [PMID:27194709] Shibuta M,Abe M FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells. Plant Cell Physiol., 2017. 58(11): p. 2017-2025 [PMID:29036620]