PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00725.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 248aa    MW: 27458.2 Da    PI: 9.0761
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00725.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox50.53.5e-1698153256
                                   T--SS--HHHHHHHHHHHHHSSS--HH.HHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   2 rkRttftkeqleeLeelFeknrypsae.ereeLAkklgLterqVkvWFqNrRakek 56 
                                   rk+ ++tkeq   Le+ F+++++++ + ++  LA++l+L  rqV vWFqNrRa+ k
  Zmw_sc00725.1.g00040.1.am.mk  98 RKKLRLTKEQSALLEDRFKEHSTLNPQkQKVALANQLNLRPRQVEVWFQNRRARTK 153
                                   78889*******************97526789**********************98 PP
2HD-ZIP_I/II118.73.3e-3898187189
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLep.erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerL 80 
                                   +kk+rl+keq++lLE+ F+e+++L+p ++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+dye Lkr++++l+een++L
  Zmw_sc00725.1.g00040.1.am.mk  98 RKKLRLTKEQSALLEDRFKEHSTLNPqKQKVALANQLNLRPRQVEVWFQNRRARTKLKQTEVDYELLKRCCETLTEENRNL 178
                                   69***********************94589*************************************************** PP

                   HD-ZIP_I/II  81 ekeveeLre 89 
                                   ++e  +Lr+
  Zmw_sc00725.1.g00040.1.am.mk 179 HRELLQLRA 187
                                   *******94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.27E-1686156IPR009057Homeodomain-like
PROSITE profilePS5007115.90494155IPR001356Homeobox domain
SMARTSM003891.5E-1196159IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.2E-1696158IPR009057Homeodomain-like
CDDcd000866.50E-1498156No hitNo description
PfamPF000461.5E-1398153IPR001356Homeobox domain
PROSITE patternPS000270130153IPR017970Homeobox, conserved site
SMARTSM003404.4E-17155198IPR003106Leucine zipper, homeobox-associated
PfamPF021831.8E-9155188IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MEHEDVGLAL GLSLSSGHHG PKERRPSPST QLRALEPSLS LSIKADDGSQ TAQVRPLIGA  60
VKRELPVEED EYGPMDRAFY SAAPPAAAAD DDEGCNSRKK LRLTKEQSAL LEDRFKEHST  120
LNPQKQKVAL ANQLNLRPRQ VEVWFQNRRA RTKLKQTEVD YELLKRCCET LTEENRNLHR  180
ELLQLRALTH PHRAAFFMPA TALSVCPSCE RLAGAPSATA VVADRQPKAA GTRRAAPLFS  240
TFTKSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196102SRKKLRL
2147155RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983488.11e-115homeobox-leucine zipper protein HOX15
SwissprotA2Z4C42e-75HOX15_ORYSI; Homeobox-leucine zipper protein HOX15
TrEMBLK4AE821e-114K4AE82_SETIT; Uncharacterized protein
STRINGSi037189m1e-114(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698