PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00722.1.g00160.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 572aa    MW: 62673.2 Da    PI: 10.2174
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00722.1.g00160.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.67e-19166213148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT+eEde+lv ++k++G g+W+t ++  g+ R++k+c++rw +yl
  Zmw_sc00722.1.g00160.1.am.mk 166 KGPWTAEEDEKLVAYIKKHGQGNWRTLPKNAGLARCGKSCRLRWTNYL 213
                                   79********************************************97 PP
2Myb_DNA-binding52.41.2e-16219263147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rgr++ eE+e +++++  lG++ W++Ia++++ gRt++++k++w+++
  Zmw_sc00722.1.g00160.1.am.mk 219 RGRFSFEEEETIIQLHSILGNK-WSAIAARLP-GRTDNEIKNFWNTH 263
                                   89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.2E-26157216IPR009057Homeodomain-like
PROSITE profilePS5129425.528161217IPR017930Myb domain
SuperFamilySSF466895.24E-31163260IPR009057Homeodomain-like
SMARTSM007173.5E-15165215IPR001005SANT/Myb domain
PfamPF002493.1E-16166213IPR001005SANT/Myb domain
CDDcd001677.83E-13168213No hitNo description
Gene3DG3DSA:1.10.10.608.9E-26217268IPR009057Homeodomain-like
PROSITE profilePS5129419.917218268IPR017930Myb domain
SMARTSM007173.7E-16218266IPR001005SANT/Myb domain
PfamPF002494.6E-15219263IPR001005SANT/Myb domain
CDDcd001671.20E-11221264No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MDDDAALRTV SRFFDCRSEA LDSALRPARR PLTPLPRTPR RLAIARASRR ATFGAWGCSA  60
VTVGLLTFYP PRPTPRWIPR AADPRCVSTS AVPRGAARPR RGRGTQMPAP NPVDFAPPSR  120
SRAYKGPPVL HLNLLSSFLA SGSDRSGSSS IQMGRAPCCE KTGLKKGPWT AEEDEKLVAY  180
IKKHGQGNWR TLPKNAGLAR CGKSCRLRWT NYLRPDIKRG RFSFEEEETI IQLHSILGNK  240
WSAIAARLPG RTDNEIKNFW NTHIRKRLLR MGIDPVTHAP RLDLLDLSSL LKPAAAAYYP  300
TQADLDTLRA FEPLANYPDL LRLASALLAG TPAVADHQQQ LLPWLLHQAQ MTQQAAAAAM  360
TAQQVTPPTT QADQFMQQTA CQMSGLFHAN PTTTTMQQMA AQQQQQQQIH QDTTAACHSV  420
PPPPSYVDSL LDMPALMQMV QQQSDASNLQ QQQWSSTVTS SNNNNVGGSG VSTPSFSPVT  480
RLSSNSITAA TTYDATTNEA AALFNMQLSD LLDVSDYIVA EVASHDWVTR PLSLSFCVTN  540
LSPVKKNRAR SAFAGRGCMS RSSPDPLARL TP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-301642685108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802158.11e-161transcription factor MYB102-like
TrEMBLA0A2S3H3C91e-160A0A2S3H3C9_9POAL; Uncharacterized protein
STRINGPavir.J38204.1.p1e-155(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563