PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00717.1.g00330.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 474aa    MW: 51838.5 Da    PI: 9.9915
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00717.1.g00330.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-1655100147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rg W + Ed +l+++v+q+G+ +W++Ia+++  gR++k+c++rw++ 
  Zmw_sc00717.1.g00330.1.am.mk  55 RGHWRPAEDARLKELVAQFGPQNWNLIAEKLD-GRSGKSCRLRWFNQ 100
                                   899*****************************.***********996 PP
2Myb_DNA-binding56.66e-18107151147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   r ++++eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ +
  Zmw_sc00717.1.g00330.1.am.mk 107 RRAFSEEEEERLLAAHRAYGNK-WALIARLFP-GRTDNAVKNHWHVL 151
                                   678*******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.14250101IPR017930Myb domain
SMARTSM007171.9E-1354103IPR001005SANT/Myb domain
PfamPF002491.8E-1555100IPR001005SANT/Myb domain
SuperFamilySSF466892.13E-2755148IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.9E-2656108IPR009057Homeodomain-like
CDDcd001672.32E-125899No hitNo description
PROSITE profilePS5129427.25102156IPR017930Myb domain
SMARTSM007178.8E-16106154IPR001005SANT/Myb domain
PfamPF002496.4E-15107151IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-20109154IPR009057Homeodomain-like
CDDcd001671.47E-7118152No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MAPEMVGFYG PVPPAPFQEE REQQVVVDAE DVYDVEDGGA GHGHGGGGQG KLCSRGHWRP  60
AEDARLKELV AQFGPQNWNL IAEKLDGRSG KSCRLRWFNQ LDPRINRRAF SEEEEERLLA  120
AHRAYGNKWA LIARLFPGRT DNAVKNHWHV LMARRQREHA GSLRRRKPAF SSSSSSPTPA  180
PPTHYAPVVV LHHHHYGSPP PLPFHAAQHG GAQEAYSGGG GGDSDESAST CTTDLSLGSS  240
APVPCFYQST YSAPTPVLGR YDMVPRAAAP APSAFTPSPR SAFSAPSLSR HREPAFPAGG  300
DKPALPFFDF FGVGARSAKG QQKQTAARVT GWSHGPRLPS PRMARQRRFP PSQPNCSLVP  360
VGYERTLCAS SGRTMPAGPA PLPLRHRPPK MSPDAIQFGL FLFVLERAMK WSCSTTHQSA  420
GARTESGSMT ATTRRLMEKG FFYLLKPESL PHWYEMFWSL APVELLVRAP PSTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-31551557107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457638.11e-120transcription factor MYB117
SwissprotQ5NBM84e-95CSA_ORYSJ; Transcription factor CSA
TrEMBLC5XH761e-119C5XH76_SORBI; Uncharacterized protein
STRINGSb03g010960.11e-120(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Publications ? help Back to Top
  1. Leonard LM,Follette VM
    Sexual functioning in women reporting a history of child sexual abuse: review of the empirical literature and clinical implications.
    Annu Rev Sex Res, 2002. 13: p. 346-88
    [PMID:12836736]
  2. Wang L,Li X,Chen Z
    Sulfated modification of the polysaccharides obtained from defatted rice bran and their antitumor activities.
    Int. J. Biol. Macromol., 2009. 44(2): p. 211-4
    [PMID:19135473]
  3. Wang L,Huang H,Wei Y,Li X,Chen Z
    Characterization and anti-tumor activities of sulfated polysaccharide SRBPS2a obtained from defatted rice bran.
    Int. J. Biol. Macromol., 2009. 45(4): p. 427-31
    [PMID:19549538]
  4. Zhang H, et al.
    Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development.
    Plant Cell, 2010. 22(3): p. 672-89
    [PMID:20305120]
  5. Zhang H, et al.
    Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(1): p. 76-81
    [PMID:23256151]
  6. Zhu X, et al.
    Brassinosteroids promote development of rice pollen grains and seeds by triggering expression of Carbon Starved Anther, a MYB domain protein.
    Plant J., 2015. 82(4): p. 570-81
    [PMID:25754973]
  7. Li X, et al.
    Metabolic and transcriptomic signatures of rice floral organs reveal sugar starvation as a factor in reproductive failure under heat and drought stress.
    Plant Cell Environ., 2015. 38(10): p. 2171-92
    [PMID:25828772]
  8. Shaar-Moshe L,Hübner S,Peleg Z
    Identification of conserved drought-adaptive genes using a cross-species meta-analysis approach.
    BMC Plant Biol., 2015. 15: p. 111
    [PMID:25935420]