PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00714.1.g00130.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 371aa    MW: 38772.6 Da    PI: 7.7729
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00714.1.g00130.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00087246268123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C++Cg  F +   L  H+r+H
  Zmw_sc00714.1.g00130.1.am.mk 246 HECSICGAEFASGQALGGHMRRH 268
                                   78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.28E-8136159No hitNo description
PfamPF139123.7E-11136161IPR007087Zinc finger, C2H2
SMARTSM003550.11137159IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.263137164IPR007087Zinc finger, C2H2
PROSITE patternPS000280139159IPR007087Zinc finger, C2H2
SuperFamilySSF576671.28E-8241268No hitNo description
PfamPF139121.6E-12245269IPR007087Zinc finger, C2H2
SMARTSM003550.016246268IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.429246273IPR007087Zinc finger, C2H2
PROSITE patternPS000280248268IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MGGVRQEKEA AAPPTALVPA VVVKGKRSKR QRVHAPPLVL TAAAAEWSSS AASATAASAE  60
EDSGTSTPSA DDAASTNGCV TEEEEDMALC LVLLSRGEPA VAKEKVRKEG GEVAVVKEAR  120
FRSRRPADGA GAGEFVYECK TCNKCFPSFQ ALGGHRTSHK KPRLLPPVPP SSSDDKNSPA  180
AVETTTTTTA PSHPPSPPPA AQETPDATTA LLGNLPAVPA APLPKQEPGA TVSATASSGS  240
RHPRVHECSI CGAEFASGQA LGGHMRRHRP LVPAAARVDE APRKERSLLE LDLNMPAPCD  300
EAETSVTSPR FVFPVDAKRQ QAPPPLFPAT AAESGREGVW QLVRWGSGQR GNVLTNRDTL  360
SPVASPDLNR L
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975056.31e-101zinc finger protein ZAT5-like
TrEMBLA0A3L6PT031e-102A0A3L6PT03_PANMI; Zinc finger protein ZAT5-like
STRINGPavir.J13454.1.p5e-97(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285