PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00711.1.g00180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GATA | ||||||||
Protein Properties | Length: 383aa MW: 40348.2 Da PI: 6.1833 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.3 | 9.1e-18 | 264 | 298 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C t kTp+WR gp g+ktLCnaCG++y++ +l Zmw_sc00711.1.g00180.1.sm.mkhc 264 CLHCETDKTPQWRTGPMGPKTLCNACGVRYKSGRL 298 99*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 4.1E-70 | 1 | 343 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 12.571 | 258 | 294 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 3.6E-18 | 258 | 308 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 5.2E-15 | 259 | 295 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 1.14E-15 | 260 | 321 | No hit | No description |
CDD | cd00202 | 1.55E-14 | 263 | 310 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 264 | 289 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.4E-15 | 264 | 298 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MEAAEATEYG HYGGAGRERK VAGCGGDLFA VDDLLVLPYD DEEECDGEAP VVDAAGGGGG 60 TVKVKEEGGF GNLSADSSTV TTALDSCSNS FSGLANGDFS GELCEPYDQL VELEWLSNYM 120 GEGEDTFATE DLQKLQLING LSAGGFSSSA AKVSPAPVAS STQLAGRMFL PEAPVPAKAR 180 TKRYRAAPGN WSSRHLVLPP TPASPPSPAS MAISPAESGI SVQAFQAAKK PSKKKDAPQA 240 QPPSSAPAQS SGSGLAASAE GRRCLHCETD KTPQWRTGPM GPKTLCNACG VRYKSGRLVP 300 EYRPAASPTF VMSKHSNSHR KVLELRRQKE IQHGHQPHVM AGNGAGGLMH MQNPLLFDGQ 360 PIMAGDDFLV PQHLGPDYRR QLI |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00530 | DAP | Transfer from AT5G25830 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969927.1 | 1e-158 | GATA transcription factor 12 | ||||
TrEMBL | K3XIL3 | 1e-157 | K3XIL3_SETIT; GATA transcription factor | ||||
STRING | Si001735m | 1e-158 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3025 | 31 | 78 |