PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00702.1.g00200.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 294aa    MW: 32471.7 Da    PI: 5.5621
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00702.1.g00200.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.66.9e-142269148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  rg+WT +Ed  l+  v   G g+W+  ar  g++Rt+k+c++rw++yl
  Zmw_sc00702.1.g00200.1.sm.mk 22 RGPWTVDEDAVLASHVSARGEGRWNELARAAGLRRTGKSCRLRWLNYL 69
                                  89********************************************97 PP
2Myb_DNA-binding48.91.5e-1575118146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rg +T+ E++l ++++ ++G++ W++Ia++++ gRt++++k++w++
  Zmw_sc00702.1.g00200.1.sm.mk  75 RGDFTPREQLLVLELHSRWGNR-WSRIAAHLP-GRTDNEVKNYWRT 118
                                   899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.5851769IPR017930Myb domain
SuperFamilySSF466891.05E-2820116IPR009057Homeodomain-like
SMARTSM007173.5E-102171IPR001005SANT/Myb domain
PfamPF002494.1E-122269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-192376IPR009057Homeodomain-like
CDDcd001678.79E-82469No hitNo description
PROSITE profilePS5129421.8170124IPR017930Myb domain
SMARTSM007172.8E-1474122IPR001005SANT/Myb domain
PfamPF002491.1E-1475118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-2377122IPR009057Homeodomain-like
CDDcd001673.26E-1178118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGSYDWTTAA TSEINDAAEL RRGPWTVDED AVLASHVSAR GEGRWNELAR AAGLRRTGKS  60
CRLRWLNYLR PGVRRGDFTP REQLLVLELH SRWGNRWSRI AAHLPGRTDN EVKNYWRTRV  120
QKHARQLGCD VGSRRFDDVM RNHWMPRLVE RIYADSAAAV DDHDASASHP AAMASVPSLT  180
AGQSVAPAPP NSCGSRVEPC ASSDASSATT GQSSSDSSHG AQFQTDSPIM TAAGTDCWSS  240
TEQCQYDMLD GSWSDLLARA SHDESDSAEL HGLELDEAVV NFWSLDDIWL QQLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-241911624120MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817284.11e-110transcription factor JAMYB-like
SwissprotQ2QZJ81e-78JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBLA0A2S3HVZ61e-109A0A2S3HVZ6_9POAL; Uncharacterized protein
STRINGPavir.Eb01219.1.p1e-113(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Publications ? help Back to Top
  1. Ahn IP,Kim S,Kang S,Suh SC,Lee YH
    Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct.
    Phytopathology, 2005. 95(11): p. 1248-55
    [PMID:18943354]
  2. Campos-Soriano L,García-Martínez J,San Segundo B
    The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
    Mol. Plant Pathol., 2012. 13(6): p. 579-92
    [PMID:22212404]
  3. Yokotani N, et al.
    Role of the rice transcription factor JAmyb in abiotic stress response.
    J. Plant Res., 2013. 126(1): p. 131-9
    [PMID:22847900]
  4. Wang D, et al.
    Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response.
    Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007
    [PMID:26740780]
  5. Fred AK,Kiswara G,Yi G,Kim KM
    Screening Rice Cultivars for Resistance to Bacterial Leaf Blight.
    J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45
    [PMID:26869604]