PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00700.1.g00380.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 310aa    MW: 35283.3 Da    PI: 10.7124
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00700.1.g00380.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.3e-07285307226
                                     -S---SGGGGTS--TTTTT-SS-SS CS
                         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                     k e+Cr+f r G+C++ + C+F H+
  Zmw_sc00700.1.g00380.1.sm.mkhc 285 KVEICRDFKR-GECNR-PACRFYHP 307
                                     99********.*****.*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.061106134IPR000571Zinc finger, CCCH-type
SMARTSM0035619107133IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.366151179IPR000571Zinc finger, CCCH-type
SMARTSM003561.1152178IPR000571Zinc finger, CCCH-type
PfamPF146081.7157176No hitNo description
SMARTSM003561.3182206IPR000571Zinc finger, CCCH-type
PfamPF146080.27186204No hitNo description
PROSITE profilePS5010311.131186207IPR000571Zinc finger, CCCH-type
SMARTSM003560.013251276IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.934251277IPR000571Zinc finger, CCCH-type
PfamPF146080.014257275No hitNo description
SMARTSM003562.6E-4283308IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.709283309IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-4285307IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MASSEIPNPA TDVTNLDNAV SAPATVAADA PAPALSSSPP LPPRKRRLSP SPSPSPTRST  60
SRSRSRSPRR LRRSRSRSRS RSRSQNRSRS RSPQYPHDGK RRRHNDLTVE VCRDYLRDRC  120
TRADIEFRYA HPHRSVTVDR SLLKSIGVED PKVKMVCRDF AIGKCSRPAN ECRFLHHSSV  180
EDCAIICQNF LRGRCERKSC RYSHAVAHPM PVQPMGNVPI QYPEMFYMPP PLGVPMMGPP  240
PSPPRAFADF RNSVKVCRDF LKNMCNRESC RFLHPDTHTP VMSDKVEICR DFKRGECNRP  300
ACRFYHPYAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17282RSRSRSRSRSR
27482RSRSRSRSR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318777.11e-118zinc finger CCCH domain-containing protein 28-like isoform X2
SwissprotQ0JD071e-101C3H28_ORYSJ; Zinc finger CCCH domain-containing protein 28
TrEMBLA0A1Z5RD071e-117A0A1Z5RD07_SORBI; Uncharacterized protein
STRINGSb06g017290.21e-116(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109041922
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]