PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00695.1.g00110.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 390aa    MW: 41561.9 Da    PI: 7.3822
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00695.1.g00110.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61.1e-161462148
                                    TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                                    +g+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl
  Zmw_sc00695.1.g00110.1.sm.mkhc 14 KGPWSPEEDAKLKAYIEEHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                                    79*********************************************97 PP
2Myb_DNA-binding39.41.4e-1269111246
                                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                 Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                     g +T+eE+ ++ ++    G++ W+ Ia+ ++ gRt++++k++w++
  Zmw_sc00695.1.g00110.1.sm.mkhc  69 GDFTEEEEHIICRLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                                     789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.856962IPR017930Myb domain
SuperFamilySSF466896.53E-2711109IPR009057Homeodomain-like
SMARTSM007173.1E-131364IPR001005SANT/Myb domain
PfamPF002491.0E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-241569IPR009057Homeodomain-like
CDDcd001673.15E-101662No hitNo description
PROSITE profilePS5129422.22963117IPR017930Myb domain
SMARTSM007178.5E-1167115IPR001005SANT/Myb domain
PfamPF002492.7E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MGRAPCCDKV NVKKGPWSPE EDAKLKAYIE EHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGD FTEEEEHIIC RLYISIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGK  120
RAPSSRSRAA NQGPYLSTAA AGGNMCRNTS GVSNSAAMAT QALSASALER IQLHMRLQGL  180
YGAFGCAAAG GTGAGANTPQ YWPKLETLLE SKLQLPATEP VDAVATTVNV HQPQHVVDQS  240
LAVAVGRAVE TEQLGSIGAA TYNLTPCSFE RPSKPEFCSP SAATEADASG LMVNSGIYGA  300
GFGPEHDEIY DFLYNKYGSM LGAVGAQGGG HIIPSLPELQ CPDGAAAIVG ADEKFSTWTA  360
TSCDYGQLQG NPIGGGGMQD YGLGGYDQWC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792029.11e-164transcription factor CSA-like
SwissprotQ9FKL22e-86MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A2T7FD291e-163A0A2T7FD29_9POAL; Uncharacterized protein
STRINGPavir.Ab03119.1.p1e-167(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]