PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00681.1.g00330.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 337aa    MW: 36792.9 Da    PI: 9.1174
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00681.1.g00330.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30252310159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   ldDgy+WrKYG+K vk+s++pr+YYrC+++gC+vkk+ve++++dp++v+++Yeg Hnh 
  Zmw_sc00681.1.g00330.1.am.mk 252 LDDGYRWRKYGKKAVKNSPNPRNYYRCSTEGCNVKKRVEKDRDDPSYVVTIYEGVHNHA 310
                                   59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.1E-32239312IPR003657WRKY domain
SuperFamilySSF1182904.71E-27245312IPR003657WRKY domain
PROSITE profilePS5081130.664247312IPR003657WRKY domain
SMARTSM007741.1E-35252311IPR003657WRKY domain
PfamPF031066.6E-24253309IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MFPCCRLVSG DRALQQHCYD FDRLPTYEPL PLSVDSSRTT QHDDVNGQRH VGDLGGNKST  60
RRRGWRCLLA RACEETSPPS NRIGSPVRNP RRARAYKNGD SADAACLSSH PHAMEYRHPY  120
SSGSASASAN YGDASPAADF RPAAFGAGRP AVRPAPLDVF DYLSDEGAHP APAAVPAVPT  180
FGSPPPPPPR SMPAVQVVPD AAGYGHAARP RGFMYLNIFF PRGAASVAAA AEEPTTMTDR  240
IAFRMRSDKE VLDDGYRWRK YGKKAVKNSP NPRNYYRCST EGCNVKKRVE KDRDDPSYVV  300
TIYEGVHNHA SPGTVYYATQ DAASGRFFVS GTHHPGH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-22242312777Probable WRKY transcription factor 4
2lex_A7e-22242312777Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817958.13e-75probable WRKY transcription factor 57
TrEMBLA0A3L6R2X64e-74A0A3L6R2X6_PANMI; Uncharacterized protein
STRINGPavir.Eb02766.1.p2e-73(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206