PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00680.1.g00170.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family FAR1
Protein Properties Length: 693aa    MW: 79769.6 Da    PI: 6.6503
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00680.1.g00170.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR172.87.3e-2354140290
                            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtk 80 
                                      Y++Y++++GFsvrk k+++   +++i +++++Cskeg + +e  +  +++ +r+ trt+Cka+++ + +++g+w v++
  Zmw_sc00680.1.g00170.1.sm.mkhc  54 LYCDYGHRIGFSVRKGKQSYFIGTKNIRTKDYYCSKEGLKYDEPVT--EANFNRPDTRTNCKAMIRFRVDEKGRWTVIR 130
                                     7********************9*******************99988..9999*************************** PP

                            FAR1  81 leleHnHela 90 
                                     ++ eHnH+la
  Zmw_sc00680.1.g00170.1.sm.mkhc 131 FVPEHNHQLA 140
                                     ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.9E-2154140IPR004330FAR1 DNA binding domain
PfamPF105511.6E-33262355IPR018289MULE transposase domain
PROSITE profilePS5096610.064540578IPR007527Zinc finger, SWIM-type
PfamPF044341.3E-7547575IPR007527Zinc finger, SWIM-type
SMARTSM005752.1E-7553580IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MEGTQVSQEQ RLQIRDNGEA AEKAGDYGNA LSRKEVTEEL LGCVVHSEEE AYRLYCDYGH  60
RIGFSVRKGK QSYFIGTKNI RTKDYYCSKE GLKYDEPVTE ANFNRPDTRT NCKAMIRFRV  120
DEKGRWTVIR FVPEHNHQLA KPGERHMLRS AKSLAVGKSG VIDPSASTES HQINGLSDMI  180
EGDVSENPEY TIRDCYNQVS MQGITIIDAG DSQSLVSYFK RRTNEEGMFY WDVQVDQEGR  240
MTNFFYRDGK SRNDYDCFGD AVIFDTTYRT NKYNLICATF VGVDHHWQNV VFGCAFLLDE  300
SVASYVWLFK SFLESMGGRS PRSIFTDQDE AIMQAVEQVF PNTQHCFSYW HILKNAQSHL  360
GALNTSQAFQ NMFMKCMQGS DSEEDLEKSW TEILHEYKLH DNSWLIDLYR FRYKWCSAFN  420
KDTFDGGINS SQWGDVSNNI LNGISDESTS LTRFALLLEK VIKLLRRHES EEDFRCSQTA  480
PVRAVKHSTV LKQAAESYTH RIYKLFEAEF LDGCGATSCY ETSSGGNLLR YEITMQGRGS  540
KVWAALDTST MEITCSCRKF ERMGILCSHA LKAFSLQNVD TIPEKYILKR WTKDARRSVY  600
KLGQDDSTQQ ECTEAELAYR NRAMQYAYNL IMKSQELEES RKTFWDSLET GEKALEVFFE  660
MRDLRTQAAK DANKKEKRKK KPSKGPILSI PNS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801012.10.0protein FAR1-RELATED SEQUENCE 9-like isoform X1
RefseqXP_025801013.10.0protein FAR1-RELATED SEQUENCE 9-like isoform X1
RefseqXP_025801014.10.0protein FAR1-RELATED SEQUENCE 9-like isoform X2
RefseqXP_025801015.10.0protein FAR1-RELATED SEQUENCE 9-like isoform X3
RefseqXP_025801016.10.0protein FAR1-RELATED SEQUENCE 9-like isoform X4
TrEMBLA0A2T8KRX90.0A0A2T8KRX9_9POAL; Uncharacterized protein
STRINGPavir.Bb02863.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967