PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00678.1.g00170.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 447aa MW: 47016.8 Da PI: 5.7756

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00678.1.g00170.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32	2.2e-10	192	236	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er+RR r+++++ eLr l+P+ +K++Ka+i Av Y+ksLq Zmw_sc00678.1.g00170.1.am.mk 192 IVSERKRRVRMKERLYELRALVPNI-----TKMDKASIIADAVVYVKSLQ 236 568*******************7.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	7.58E-13	183	236	No hit	No description
SuperFamily	SSF47459	2.62E-15	183	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.51	186	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.8E-16	188	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-11	192	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.2E-8	192	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MEREEIRSTP TQAGQVTPPS AGVRAAGQTR RGSLPCSCAL VPARAADDPP VILGPPPPPP 60 NSSAMEHDLL QLLHLPAQDH LLLSSGFFGV ATGGGGAAVH TPCGDAAGLD DCGWMEDLMH 120 LGDELFAGDD DSAAGPGVDH QLLSMCGSGS PEGPPAPSVS LELDGAEGSP PSVEQDDASA 180 ATRKRRDRSK TIVSERKRRV RMKERLYELR ALVPNITKMD KASIIADAVV YVKSLQSRAT 240 KLKEEVATLE ATPRPAAARH QQQQQHPKQH AAAGRRRQSR GGRLPAPDGD DNDDGSTGPA 300 GARVMNVDVT QVGDGQFYVT VECERRDGVA APLYAAVESL ACFRLESSSF GRSGHDRVVS 360 THILKGNDQL GNATVGEGTV NLWMMAALLK EGFQPEATAP IPDCPMAPPQ LPPPPAPTPA 420 SCVPPQGLPT ADAQHEKRTR NPVAVDG

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MEREEIRSTP TQAGQVTPPS AGVRAAGQTR RGSLPCSCAL VPARAADDPP VILGPPPPPP  60
NSSAMEHDLL QLLHLPAQDH LLLSSGFFGV ATGGGGAAVH TPCGDAAGLD DCGWMEDLMH  120
LGDELFAGDD DSAAGPGVDH QLLSMCGSGS PEGPPAPSVS LELDGAEGSP PSVEQDDASA  180
ATRKRRDRSK TIVSERKRRV RMKERLYELR ALVPNITKMD KASIIADAVV YVKSLQSRAT  240
KLKEEVATLE ATPRPAAARH QQQQQHPKQH AAAGRRRQSR GGRLPAPDGD DNDDGSTGPA  300
GARVMNVDVT QVGDGQFYVT VECERRDGVA APLYAAVESL ACFRLESSSF GRSGHDRVVS  360
THILKGNDQL GNATVGEGTV NLWMMAALLK EGFQPEATAP IPDCPMAPPQ LPPPPAPTPA  420
SCVPPQGLPT ADAQHEKRTR NPVAVDG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	183	198	KRRDRSKTIVSERKRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025825747.1	1e-111	transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
TrEMBL	A0A3L6PRK6	1e-110	A0A3L6PRK6_PANMI; Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
STRING	Pavir.J29678.1.p	1e-111	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5546	30	57