PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00665.1.g00330.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 310aa MW: 34656.9 Da PI: 9.1282 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.6 | 3.4e-14 | 49 | 93 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E+ l+++ +++G W++I +++g +t+ q++s+ qk+ Zmw_sc00665.1.g00330.1.sm.mkhc 49 REKWTEDEHNLFLESLELHGRA-WRRIQEHIG-SKTAVQIRSHAQKF 93 789*****************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.95E-15 | 43 | 99 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.604 | 44 | 98 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-8 | 46 | 95 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-14 | 47 | 96 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 6.7E-12 | 48 | 96 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-12 | 49 | 92 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.94E-9 | 51 | 94 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MARFQEFEVN CDVGREYHQK NPLNSTAMDL SAEERMPKAR KPYTISKQRE KWTEDEHNLF 60 LESLELHGRA WRRIQEHIGS KTAVQIRSHA QKFFSKVTRE ASGDGNGTAA APQIRIPPPR 120 PKRKPTHPYP RNLGNSPGKD TPSLKQLDKP RLQVVPSLYE QENGSPKSVL TTAQVVRSPA 180 SSVDAEDRYP APRIAAVEGA TQLPPYKAEQ PHYQPSQAAD CRFTSGEGSC TASVTTSGGV 240 PETPTWNSDS VESMQLINNE DEVIPVPGSR KCANPTPDRL QGFVPYKKWK MVQSKTPEVE 300 ANREMTRLCL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006652697.1 | 2e-75 | PREDICTED: uncharacterized protein LOC102715571 | ||||
TrEMBL | A0A0D9ZPS7 | 1e-75 | A0A0D9ZPS7_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM04G22920.1 | 2e-76 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2722 | 36 | 86 |