PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00659.1.g00340.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 652aa    MW: 67915.4 Da    PI: 6.4737
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00659.1.g00340.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS290.54.6e-892956512374
                          GRAS   2 velLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseela 79 
                                   v++L e+A+  ++gd+  a+++Larl+ +   a  +g+p+ R a+yf+eAL+  l+       +a +p ++++++++ +l 
  Zmw_sc00659.1.g00340.1.am.mk 295 VDQLAEAAKLAEAGDAFGAREILARLNYRlpaAPAAGTPLLRSAFYFKEALRLALSP----NGEAPAPPASTPYDVVLKLG 371
                                   689*************************999455566******************99....55666777888899****** PP

                          GRAS  80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeelee 160
                                   a+k+fsevsP+l+f+hlt+ qa+l+++ g+++vH++Dfdi++G QW++L+q+La R +++  l++T+++sp+s++  el+ 
  Zmw_sc00659.1.g00340.1.am.mk 372 AYKAFSEVSPVLQFAHLTCVQAVLDELGGANCVHVLDFDIGMGEQWASLMQELAHR-RPATVLKVTALVSPASHHPLELQL 451
                                   *******************************************************9.7889******************** PP

                          GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvv 240
                                   ++e+L  fA+elgv f+f ++   ++++l++ eL  +  g+a+aV+l +   ++         + +++L+lvk+l +kvvv
  Zmw_sc00659.1.g00340.1.am.mk 452 IHENLYGFANELGVLFQFAAF---NIDTLDPAELVANAsGDAVAVHLPVGSAHVA--------AMPAILRLVKRLGAKVVV 521
                                   ********************9...9*********88888***********99998........4566************** PP

                          GRAS 241 vveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee 321
                                    v++ +d+++ +F++++++a++ +++l++s++a  ++ +e+++k+Er+l+++++++ v  ++++      +   Wr  + +
  Zmw_sc00659.1.g00340.1.am.mk 522 SVDHGCDRTELPFAAHLFQAFQSCVSLLESIDAV-GTGAETAAKIERFLVQPDVEQRVVGRHRA---GVDKPLPWRTVFAS 598
                                   *******************************997.8999*******************988887...7777889******* PP

                          GRAS 322 aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                   aGF pvp s++a++qa++ll+kv+  g+rve++ g l+l+W++ +LvsvSaWr
  Zmw_sc00659.1.g00340.1.am.mk 599 AGFVPVPASSFAESQAESLLKKVALMGFRVENRGGVLCLYWQRSELVSVSAWR 651
                                   ****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.976268631IPR005202Transcription factor GRAS
PfamPF035141.6E-86295651IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MMAHFGAIGR PASRVGRRKK RRGKQAASSA IAIPGLDLGK VSGAAGLIWE PTSVLDQRHS  60
PSPSPPTSAS TLSSPLGSAT AGVAALAGPN AKNHVAQPPP VAGAWPGGAA VEDATGGGKE  120
DWQLTPFDMG LDSAGEGWDP AGAVLSDAPA PTGLGPDHTF LRWFIGGEDA SEGMGGVMDP  180
PVLELDHAPS MVSSAFGSNL TFIPAVEDTK PAPPFGHAPA SFLLHHHPQP HAGLFGSHPS  240
FDAAAVAAQK RSHPMTTAPA PKLPPFPGAV ASAGGFVPAL KPKAEAANDE EAAAVDQLAE  300
AAKLAEAGDA FGAREILARL NYRLPAAPAA GTPLLRSAFY FKEALRLALS PNGEAPAPPA  360
STPYDVVLKL GAYKAFSEVS PVLQFAHLTC VQAVLDELGG ANCVHVLDFD IGMGEQWASL  420
MQELAHRRPA TVLKVTALVS PASHHPLELQ LIHENLYGFA NELGVLFQFA AFNIDTLDPA  480
ELVANASGDA VAVHLPVGSA HVAAMPAILR LVKRLGAKVV VSVDHGCDRT ELPFAAHLFQ  540
AFQSCVSLLE SIDAVGTGAE TAAKIERFLV QPDVEQRVVG RHRAGVDKPL PWRTVFASAG  600
FVPVPASSFA ESQAESLLKK VALMGFRVEN RGGVLCLYWQ RSELVSVSAW RC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-2932665132375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11524GRRKKRRGKQ
21724RKKRRGKQ
31823KKRRGK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983723.10.0scarecrow-like protein 6 isoform X1
TrEMBLA0A368SNB30.0A0A368SNB3_SETIT; Uncharacterized protein
STRINGSb01g029650.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67232954