PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00654.1.g00280.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family FAR1
Protein Properties Length: 464aa    MW: 48716.5 Da    PI: 10.3105
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00654.1.g00280.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.82.1e-24241330190
                            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwev 78 
                                     +fY+ Y+ +vGF+vrk++ ++sk++geit+r+f Cs+eg+r+  k + +++r + + +rtgC+a+l ++++k d+k ev
  Zmw_sc00654.1.g00280.1.am.mkhc 241 EFYRYYGWMVGFHVRKEYGNRSKKTGEITSRRFSCSREGHRAGAKAA-SNKRLPMPDSRTGCHAHLIIRRRKqDSKLEV 318
                                     6******************************************9998.9999******************999****** PP

                            FAR1  79 tkleleHnHela 90 
                                     + +e  HnH+l+
  Zmw_sc00654.1.g00280.1.am.mkhc 319 YVFEPRHNHPLF 330
                                     **********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.6E-21241330IPR004330FAR1 DNA binding domain
PROSITE profilePS508119.328256330IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MDPTARVSDQ VRPSSPSPTM NSSEADPHPA PPAAAAQSAE PGSQGSIPSP QKPNPTIPTP  60
PPGNASAANA TAESSRNAPE PTTATAAPSL KAPGVTTAAP CRKSSRAAST TAAATAKPSR  120
NTPGPTTATT APSLKALGVT TAAPSGKASG ATSTAAAACL RNPSGATTSA AAVSRIPSAP  180
TTTTTNAISG YPSVATAAVA AQNPLGTAAV GSVPRETAPT RPEDYTPRMG MEFESEQEAY  240
EFYRYYGWMV GFHVRKEYGN RSKKTGEITS RRFSCSREGH RAGAKAASNK RLPMPDSRTG  300
CHAHLIIRRR KQDSKLEVYV FEPRHNHPLF APSSMPCPFR GMAMPNGVPT PDYLANVGEP  360
SGQENLREKS SKARTKESKK GQKNKIQPRN CIEKGLRKKQ KIHTEQSSMP YPLSNASAQP  420
GNALFQGIDL SNPTGPINYE GMHSGLHLSF TPELGFDLSH LSDK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880889.11e-61protein FAR1-RELATED SEQUENCE 12
RefseqXP_025880890.11e-61protein FAR1-RELATED SEQUENCE 12
RefseqXP_025880891.11e-61protein FAR1-RELATED SEQUENCE 12
RefseqXP_025880892.11e-61protein FAR1-RELATED SEQUENCE 12
RefseqXP_025880893.11e-61protein FAR1-RELATED SEQUENCE 12
RefseqXP_025880894.11e-61protein FAR1-RELATED SEQUENCE 12
RefseqXP_025880895.11e-61protein FAR1-RELATED SEQUENCE 12
RefseqXP_025880896.11e-61protein FAR1-RELATED SEQUENCE 12
RefseqXP_025880897.11e-61protein FAR1-RELATED SEQUENCE 12
RefseqXP_025880898.11e-61protein FAR1-RELATED SEQUENCE 12
TrEMBLA0A0D9ZKQ77e-93A0A0D9ZKQ7_9ORYZ; Uncharacterized protein
TrEMBLA0A1E5VTY16e-94A0A1E5VTY1_9POAL; Uncharacterized protein (Fragment)
STRINGOGLUM04G12170.11e-93(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15895914