PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00647.1.g00420.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 255aa MW: 28608.4 Da PI: 8.2241

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00647.1.g00420.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.2	5.7e-31	26	78	1	53
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 kprlrWtp+LHerFveav++LGG++kAtPk++l+lm++ gLtl+h+kSHLQ++ Zmw_sc00647.1.g00420.1.am.mkhc 26 KPRLRWTPDLHERFVEAVTKLGGPDKATPKSVLRLMGMRGLTLYHLKSHLQMF 78 79**************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-29	23	78	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.345	23	83	IPR017930	Myb domain
TIGRFAMs	TIGR01557	8.7E-23	26	79	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.22E-14	26	81	IPR009057	Homeodomain-like
Pfam	PF00249	1.2E-8	28	77	IPR001005	SANT/Myb domain
Pfam	PF14379	1.8E-10	124	149	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MFEGMERAGY GAAAAMGGVV LSRDPKPRLR WTPDLHERFV EAVTKLGGPD KATPKSVLRL 60 MGMRGLTLYH LKSHLQMFTE IQTWEAEQER YRLGSQKRGI CSTGHQFLRS GTSYHSICCQ 120 QQHGVQKKLQ MRIEAQGKYL QTILEKAQSN LSYDASGAEN LEATRSQLTD FNLALSGFMD 180 NVTQVCEQNS GELTKAMSQD NLRTSNIGFQ LYHGVQDVED VKCTPDDGLL LLDLNIRGGY 240 GHRPSSDLKI NQHMR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	7e-19	26	78	1	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-19	26	78	1	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-19	26	78	1	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-19	26	78	1	53	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808925.1	1e-124	myb family transcription factor PHL11-like
TrEMBL	A0A3L6QHI3	1e-123	A0A3L6QHI3_PANMI; Myb family transcription factor APL-like
STRING	Si018049m	1e-123	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3940	34	70