PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00646.1.g00020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 290aa    MW: 30815.7 Da    PI: 8.5522
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00646.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.5e-1878126148
                                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 
                                     rg+W++eEde l  +v+q+G+g +W + +++ g++R++k+c++rw++yl
  Zmw_sc00646.1.g00020.1.sm.mkhc  78 RGPWSPEEDEALRSYVQQHGSGgNWIALPKKAGLKRCGKSCRLRWLNYL 126
                                     89*********************************************97 PP

2Myb_DNA-binding45.32e-14133175246
                                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                 Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                     g +T+eEd  +v + +qlG++ W++Ia+ +  gRt++++k++w++
  Zmw_sc00646.1.g00020.1.sm.mkhc 133 GGFTEEEDAVIVSLYAQLGSK-WSLIASQLE-GRTDNEVKNYWNT 175
                                     569******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.20173126IPR017930Myb domain
SuperFamilySSF466896.53E-2876173IPR009057Homeodomain-like
SMARTSM007171.0E-1277128IPR001005SANT/Myb domain
PfamPF002492.3E-1678126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-2579133IPR009057Homeodomain-like
CDDcd001674.68E-1080126No hitNo description
PROSITE profilePS5129422.297127181IPR017930Myb domain
SMARTSM007174.8E-12131179IPR001005SANT/Myb domain
PfamPF002492.6E-12133175IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-23134181IPR009057Homeodomain-like
CDDcd001672.94E-10135177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MREKGREGGS NQSNGPTTND WYKYHLLPAQ QPVLLSCPTP PLPTARRRAG YLGLGALVAC  60
RSVPMGRTPC CDRTTVKRGP WSPEEDEALR SYVQQHGSGG NWIALPKKAG LKRCGKSCRL  120
RWLNYLRPDI RHGGFTEEED AVIVSLYAQL GSKWSLIASQ LEGRTDNEVK NYWNTKLKKR  180
LAIAADAAAL SPAPLAAAHS PATALFPSIT IPTVKTETYT CDDFLAPAAF RGATSLGSGG  240
GSTPASAASS ASNWSTDNDA TAGDGFLLDF CAGNSDLGAA GQLELPGGSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-23781817108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968503.11e-104transcription factor RAX2
TrEMBLK3XL561e-103K3XL56_SETIT; Uncharacterized protein
STRINGSi002629m1e-103(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412