PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00646.1.g00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 290aa MW: 30815.7 Da PI: 8.5522 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.3 | 7.5e-18 | 78 | 126 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEde l +v+q+G+g +W + +++ g++R++k+c++rw++yl Zmw_sc00646.1.g00020.1.sm.mkhc 78 RGPWSPEEDEALRSYVQQHGSGgNWIALPKKAGLKRCGKSCRLRWLNYL 126 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.3 | 2e-14 | 133 | 175 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd +v + +qlG++ W++Ia+ + gRt++++k++w++ Zmw_sc00646.1.g00020.1.sm.mkhc 133 GGFTEEEDAVIVSLYAQLGSK-WSLIASQLE-GRTDNEVKNYWNT 175 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.201 | 73 | 126 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.53E-28 | 76 | 173 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-12 | 77 | 128 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-16 | 78 | 126 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-25 | 79 | 133 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.68E-10 | 80 | 126 | No hit | No description |
PROSITE profile | PS51294 | 22.297 | 127 | 181 | IPR017930 | Myb domain |
SMART | SM00717 | 4.8E-12 | 131 | 179 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-12 | 133 | 175 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-23 | 134 | 181 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.94E-10 | 135 | 177 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MREKGREGGS NQSNGPTTND WYKYHLLPAQ QPVLLSCPTP PLPTARRRAG YLGLGALVAC 60 RSVPMGRTPC CDRTTVKRGP WSPEEDEALR SYVQQHGSGG NWIALPKKAG LKRCGKSCRL 120 RWLNYLRPDI RHGGFTEEED AVIVSLYAQL GSKWSLIASQ LEGRTDNEVK NYWNTKLKKR 180 LAIAADAAAL SPAPLAAAHS PATALFPSIT IPTVKTETYT CDDFLAPAAF RGATSLGSGG 240 GSTPASAASS ASNWSTDNDA TAGDGFLLDF CAGNSDLGAA GQLELPGGSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-23 | 78 | 181 | 7 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004968503.1 | 1e-104 | transcription factor RAX2 | ||||
TrEMBL | K3XL56 | 1e-103 | K3XL56_SETIT; Uncharacterized protein | ||||
STRING | Si002629m | 1e-103 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |