PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00641.1.g00120.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 471aa    MW: 51145.2 Da    PI: 9.5962
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00641.1.g00120.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B396.22.1e-30162263196
                                   EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 
                                   f+kv tpsdv+k++rlv+pk++ae++         ++++  l++ed+ g++W+++++y+++s++yv+tkGW++Fvk+++L 
  Zmw_sc00641.1.g00120.1.am.mk 162 FDKVVTPSDVGKLNRLVIPKQYAEKYfpldaaA--NNKGLLLSFEDSAGKQWRFRYSYWNSSQSYVMTKGWSRFVKEKRLL 240
                                   89***************************9643..457789**************************************** PP

                                   TT-EEEEEE-.SS.SEE..EEEE CS
                            B3  76 egDfvvFkld.gr.sefelvvkv 96 
                                   +gD+v F++   + ++ +l++ +
  Zmw_sc00641.1.g00120.1.am.mk 241 AGDTVSFSRGaAEdERHRLFIDW 263
                                   ********653333555566655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.1E-41153266IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-29159268IPR015300DNA-binding pseudobarrel domain
CDDcd100173.47E-26160249No hitNo description
SMARTSM010192.7E-21162267IPR003340B3 DNA binding domain
PfamPF023621.1E-27162265IPR003340B3 DNA binding domain
PROSITE profilePS5086314.706162265IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
LRHSSASLLW QPALGGLLLP AAGGINHPTA SSRFCSGEGI SCKKYTPTRE EAASFWEYKT  60
TIRMDQFPTS GRFSKEEEAD EEQKDASNSM REIPFMTACS VATAESSSAA AASASSQSLA  120
SASASSSAPF RSASGDGGGA SGSGAGEEEG KANQAVEKEH MFDKVVTPSD VGKLNRLVIP  180
KQYAEKYFPL DAAANNKGLL LSFEDSAGKQ WRFRYSYWNS SQSYVMTKGW SRFVKEKRLL  240
AGDTVSFSRG AAEDERHRLF IDWKRRIDSR DPFRFPRFAL PMPLASHYSP HHYRPWGFGG  300
GGSGFFVPPS PPATLYEHRL RQGLDFRGMN YHPAPAVGRQ LFYFGAARMP QHAPILPRAP  360
SPLHYTVQPT SGPPVVLDSV PVIESPTTAA KRVRLFGVNL DNQDSAVGGG GEPSNLQGNA  420
LSLQMPGWQQ RAPTLRLLEF PRRGAESSAA SSPSLSSSSK REKSSALDLD L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-551572663113B3 domain-containing transcription factor NGA1
5os9_B6e-551572663113B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794708.11e-171B3 domain-containing protein Os02g0683500-like
SwissprotQ6EU301e-144Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLA0A2S3GSD91e-170A0A2S3GSD9_9POAL; Uncharacterized protein
STRINGPavir.Aa00929.1.p1e-166(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]