PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00633.1.g00100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 286aa MW: 31324.4 Da PI: 8.551 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.5 | 1.8e-14 | 14 | 71 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..........TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..........kgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ ++k +G g+W++ ++ + R++k+c++rw +yl Zmw_sc00633.1.g00100.1.sm.mk 14 KGAWTKEEDQRLIAYIKAHGEGCWRSLPKAADaltadgcatgLLRCGKSCRLRWINYL 71 79****************************************9*************97 PP | |||||||
2 | Myb_DNA-binding | 58.3 | 1.8e-18 | 77 | 121 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++ ++++G++ W++Ia +++ gRt++++k++w+++ Zmw_sc00633.1.g00100.1.sm.mk 77 RGNFTEEEDELIIKFHELFGNK-WSLIAGRLP-GRTDNEIKNYWNTH 121 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.8E-23 | 5 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.06 | 9 | 71 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-11 | 13 | 73 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.39E-28 | 13 | 118 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.9E-13 | 14 | 71 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.45E-9 | 16 | 71 | No hit | No description |
PROSITE profile | PS51294 | 28.482 | 72 | 126 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-28 | 75 | 126 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-18 | 76 | 124 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.3E-17 | 77 | 121 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.38E-14 | 79 | 122 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MGRSPCCEQA HTNKGAWTKE EDQRLIAYIK AHGEGCWRSL PKAADALTAD GCATGLLRCG 60 KSCRLRWINY LRPDLKRGNF TEEEDELIIK FHELFGNKWS LIAGRLPGRT DNEIKNYWNT 120 HVKRKLLARG IDPQTHRPVS ATATAAAPAQ PHYQPPAQKP ASPPGGHHHH QPPSQSPVAC 180 SHSSDEEPRP ATSPPPRLLD IDLNLSISLA PYQPAEESGD DKPLTLVPAA TTTAEAGDIN 240 VVPVCRCLNS LRYRPGVECV CGGASSRRQK PWARSSLLQA APCYRG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-28 | 14 | 126 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826560.1 | 1e-137 | myb-related protein 308-like | ||||
Swissprot | P81393 | 1e-84 | MYB08_ANTMA; Myb-related protein 308 | ||||
Swissprot | Q9SZP1 | 1e-84 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | A0A2S3ICU8 | 1e-136 | A0A2S3ICU8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ha00871.1.p | 1e-128 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |