PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc00626.1.g00140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 210aa MW: 23246.5 Da PI: 9.6094 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.4 | 1.7e-18 | 107 | 154 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT+eEde+l++++k++G g+W++ ++ g+ R++k+c++rw +yl Zmw_sc00626.1.g00140.1.sm.mk 107 KGRWTKEEDEILARYIKEHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 154 79******************************99************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-23 | 98 | 157 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.842 | 102 | 158 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-13 | 106 | 156 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-16 | 107 | 154 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.43E-22 | 108 | 181 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.45E-13 | 109 | 154 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.6E-8 | 158 | 181 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 210 aa Download sequence Send to blast |
MQPENGDYPF APTHPHLSVP NNATVVFSPP NCAVRIFTQE PDPTSSSSQL SVPLSLCRAQ 60 AHKKPQLFAV GSGDPSSSSL NLSSSPFSLK QRGMGRAPCC EKVGLKKGRW TKEEDEILAR 120 YIKEHGEGSW RSLPKNAGLL RCGKSCRLRW INYLRADLKR GNISEEEDEM IMKLHATLGN 180 RESNTSFAFS MKTSGKTQTL VHRCPLPFST |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-13 | 105 | 181 | 5 | 80 | B-MYB |
Search in ModeBase |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |