PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00625.1.g00160.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 267aa MW: 29241.9 Da PI: 8.4077

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00625.1.g00160.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.9	5.1e-33	61	182	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 lp GfrF+Ptdeel+ +yL++k+ + +l++ ++i+ +d+ +++PwdL ++e +fF+ ++++ +r ra+ Zmw_sc00625.1.g00160.1.am.mkhc 61 LPIGFRFRPTDEELLLHYLRRKALACPLPA-DIIPVADLARLHPWDLV-PPGDADEERFFFHLPETRHW--RRGGRAAG 135 699*************************.99**********4.34456789999999988765..6999 PP NAM 80 sgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g+W+a+gk+k v+s ++ vg k+tLvf ++ g++tdWvmheyrl Zmw_sc00625.1.g00160.1.am.mkhc 136 TGVWRASGKEKLVVSPrCKRPVGAKRTLVFC---HQGGKRTDWVMHEYRL 182 **********9877889*****9...678899******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.15E-41	57	218	IPR003441	NAC domain
PROSITE profile	PS51005	40.824	61	219	IPR003441	NAC domain
Pfam	PF02365	4.3E-21	62	182	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
RSIEAARGAE EIHRSQQIRS LLPPSVSESI GWDLVRASLA MEARQPRQAG GGGGRVGLAG 60 LPIGFRFRPT DEELLLHYLR RKALACPLPA DIIPVADLAR LHPWDLVPPG DADEERFFFH 120 LPETRHWRRG GRAAGTGVWR ASGKEKLVVS PRCKRPVGAK RTLVFCHQGG KRTDWVMHEY 180 RLLPAGLLVH NPSSGPHVTS CHGAAAGAED WVVCRIFKRT KPGNGGRGRE EEVEEIPSSP 240 SSCVTDNSSH SDHEEEGEQS SSGDSRV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-26	61	219	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-26	61	219	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-26	61	219	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-26	61	219	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-26	61	219	20	168	NAC domain-containing protein 19
3swm_B	2e-26	61	219	20	168	NAC domain-containing protein 19
3swm_C	2e-26	61	219	20	168	NAC domain-containing protein 19
3swm_D	2e-26	61	219	20	168	NAC domain-containing protein 19
3swp_A	2e-26	61	219	20	168	NAC domain-containing protein 19
3swp_B	2e-26	61	219	20	168	NAC domain-containing protein 19
3swp_C	2e-26	61	219	20	168	NAC domain-containing protein 19
3swp_D	2e-26	61	219	20	168	NAC domain-containing protein 19
4dul_A	2e-26	61	219	17	165	NAC domain-containing protein 19
4dul_B	2e-26	61	219	17	165	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020184279.1	2e-79	NAC domain-containing protein 83-like
TrEMBL	A0A0A9GFU0	6e-83	A0A0A9GFU0_ARUDO; Uncharacterized protein
STRING	Pavir.Eb03721.1.p	3e-81	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8233	30	47