PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00625.1.g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | TCP | ||||||||
Protein Properties | Length: 276aa MW: 28438.8 Da PI: 6.2495 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 79.6 | 8.4e-25 | 1 | 61 | 24 | 87 |
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsss 87 ++a+caar+F+L++eLG+++d++t++WLlqqa+pai ++tgt++++as+ +s+ s ++++ Zmw_sc00625.1.g00040.1.sm.mkhc 1 MPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVAATGTGTIPASAL---ASVPSLPSPNA 61 9*********************************************9665...44444443333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 20.931 | 1 | 39 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.0E-19 | 1 | 168 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MPALCAARIF QLTRELGHKS DGETVQWLLQ QAEPAIVAAT GTGTIPASAL ASVPSLPSPN 60 AALARPHHHH MWAPPAASAG FSSAGFLNSA AGGADAAGIG GLMQRMGLPA GLDMSGGGAA 120 GGHIGFAPMF TGHAAAGVPG LELGLSQDGH IGVLAPQSLS QFYHHVGAAG GSGQLQHPHQ 180 RHQHQHQQQE DGEDEREDAE SDEESGQGLD LLWGLVAGSR SSSVLVYSHY LGDDRRSLCS 240 HFQIKMTGTG CPVISEGKKC EGVLLLYTGS MIVLAN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002456872.1 | 4e-82 | transcription factor TCP20 | ||||
Swissprot | Q9LSD5 | 5e-33 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A0A8YXQ0 | 4e-89 | A0A0A8YXQ0_ARUDO; Uncharacterized protein | ||||
STRING | Sb03g044320.1 | 1e-81 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2864 | 32 | 69 |