PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00623.1.g00200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 278aa MW: 30898.1 Da PI: 7.391 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 158.7 | 2.3e-49 | 5 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratk 79 +ppGfrFhP+d+elv +yL +k++++ + v +++vd++k+ePwdLp +++ +e +ewyfFs d+ky+tg+r+nrat+ Zmw_sc00623.1.g00200.1.am.mk 5 MPPGFRFHPRDDELVLDYLLPKLSDHCHARGGVaMADVDVNKCEPWDLPeECCVSEGNEWYFFSLPDRKYTTGERTNRATR 85 79**********************9997776777***************667778899*********************** PP NAM 80 sgyWkatgkdkevlskkgel.......vglkktLvfykgrapkgektdWvmheyrl 128 sgyWkatgkd++v++++++ vg +ktLvfy+grap+g+kt Wvmhe+r+ Zmw_sc00623.1.g00200.1.am.mk 86 SGYWKATGKDRAVVAADDKIvktpatlVGRRKTLVFYTGRAPNGRKTAWVMHEFRV 141 ***************844445666777***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-53 | 3 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.815 | 5 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.1E-25 | 6 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MEARMPPGFR FHPRDDELVL DYLLPKLSDH CHARGGVAMA DVDVNKCEPW DLPEECCVSE 60 GNEWYFFSLP DRKYTTGERT NRATRSGYWK ATGKDRAVVA ADDKIVKTPA TLVGRRKTLV 120 FYTGRAPNGR KTAWVMHEFR VELPSPPRLG REGNWVLCRV LYKSGTTTPR PASEDQAGMP 180 TSYEPDLPVT APPVIAAFNA IDGSRTAAGQ VSCFSGLPAL PFRRPVSRGD GHAMDISEKQ 240 ATGIMVSSMA SMISTGLELA PNWEQENDMA QLWNRLYC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-39 | 2 | 166 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-39 | 2 | 166 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-39 | 2 | 166 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-39 | 2 | 166 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-39 | 2 | 166 | 17 | 171 | NAC domain-containing protein 19 |
3swm_B | 2e-39 | 2 | 166 | 17 | 171 | NAC domain-containing protein 19 |
3swm_C | 2e-39 | 2 | 166 | 17 | 171 | NAC domain-containing protein 19 |
3swm_D | 2e-39 | 2 | 166 | 17 | 171 | NAC domain-containing protein 19 |
3swp_A | 2e-39 | 2 | 166 | 17 | 171 | NAC domain-containing protein 19 |
3swp_B | 2e-39 | 2 | 166 | 17 | 171 | NAC domain-containing protein 19 |
3swp_C | 2e-39 | 2 | 166 | 17 | 171 | NAC domain-containing protein 19 |
3swp_D | 2e-39 | 2 | 166 | 17 | 171 | NAC domain-containing protein 19 |
4dul_A | 2e-39 | 2 | 166 | 14 | 168 | NAC domain-containing protein 19 |
4dul_B | 2e-39 | 2 | 166 | 14 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002443999.1 | 1e-109 | NAC domain-containing protein 21/22 | ||||
TrEMBL | C5YIE8 | 1e-107 | C5YIE8_SORBI; Uncharacterized protein | ||||
STRING | Sb07g005610.1 | 1e-108 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 |