PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00622.1.g00070.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 532aa MW: 57988.7 Da PI: 10.41

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00622.1.g00070.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	107.8	1.7e-33	285	392	8	89
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.seceaesssssasnsss 87 ++++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a +c+++ s s+as s Zmw_sc00622.1.g00070.1.am.mk 285 SKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAvFSCSSAPSTSAAS---S 362 79********************************************************8888844442222222222...1 PP TCP 88 g............................k 89 + Zmw_sc00622.1.g00070.1.am.mk 363 FllgkrprqdvvvaheaaaapqppfwaalQ 392 122233333444444444444555555540 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	7.8E-30	284	384	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.808	285	339	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 532 aa Download sequence Send to blast
MERSTPGHGP LPFPSSQYIW RFDRAGEHGD EPRSRTNNTR GRAVVQAGLN CIKHAASGQA 60 NEPSILPMIQ PRPQSGLHAR LQLHRSAIAT GSQPHTVVYC HCSLRRFLQR VPPQQQGPVY 120 PLLDNRRGAT CRRRRFRAKV TPVSSVAIHK HRCRTKGQVD FNPESASLRH NKVRAADRTQ 180 RPMCPVPLYA QCCTACLSPR SLISSDARRP GTCAARQDPY PYPSIPITAT PQPSCPPTHS 240 TPRTTKAMAS RDAAATTFHV YGALPAAAST DAVTPAAKKP PSAGSKDRHS KVNGRGRRVR 300 MPIVCAARVF QLTRELGLKS DGQTIEWLLR QAEPSILAAT GSGTTPAVFS CSSAPSTSAA 360 SSFLLGKRPR QDVVVAHEAA AAPQPPFWAA LQARPVAWGL SPAQEQQAYA SVAQGHHLNL 420 LSVLSSATRP AEEEYRGSTP SPRCCKTASD DIFSATAECM HTHMLNQEHE WMVHLSLISG 480 EAEAERSGRR HDLSSRESDP PGCGLVAASW VVAGAGPWIF HWLLRWSRET WQ

Sequence ? help Back to Top

Protein Sequence Length: 532 aa Download sequence Send to blast

MERSTPGHGP LPFPSSQYIW RFDRAGEHGD EPRSRTNNTR GRAVVQAGLN CIKHAASGQA  60
NEPSILPMIQ PRPQSGLHAR LQLHRSAIAT GSQPHTVVYC HCSLRRFLQR VPPQQQGPVY  120
PLLDNRRGAT CRRRRFRAKV TPVSSVAIHK HRCRTKGQVD FNPESASLRH NKVRAADRTQ  180
RPMCPVPLYA QCCTACLSPR SLISSDARRP GTCAARQDPY PYPSIPITAT PQPSCPPTHS  240
TPRTTKAMAS RDAAATTFHV YGALPAAAST DAVTPAAKKP PSAGSKDRHS KVNGRGRRVR  300
MPIVCAARVF QLTRELGLKS DGQTIEWLLR QAEPSILAAT GSGTTPAVFS CSSAPSTSAA  360
SSFLLGKRPR QDVVVAHEAA AAPQPPFWAA LQARPVAWGL SPAQEQQAYA SVAQGHHLNL  420
LSVLSSATRP AEEEYRGSTP SPRCCKTASD DIFSATAECM HTHMLNQEHE WMVHLSLISG  480
EAEAERSGRR HDLSSRESDP PGCGLVAASW VVAGAGPWIF HWLLRWSRET WQ

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100