PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00620.1.g00090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 114aa MW: 13117.7 Da PI: 7.7839 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.8 | 5.9e-09 | 14 | 61 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 W+ d+l+ +a + + ++ +W+ + r mg +++ ++++ ++qk+ Zmw_sc00620.1.g00090.1.am.mk 14 EWSRSQDKLFERALAVYDKDtpdRWHNVVRFMGGTKSVEEVRRHYQKL 61 7*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.993 | 7 | 62 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.0E-8 | 11 | 64 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.59E-11 | 13 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.45E-7 | 14 | 61 | No hit | No description |
Pfam | PF00249 | 1.7E-6 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence Send to blast |
MTSNNRRSSP SPSEWSRSQD KLFERALAVY DKDTPDRWHN VVRFMGGTKS VEEVRRHYQK 60 LEEDVARIES GEVPFHWYGG AAPPPVTTVQ RADAGSSFPF FFLLPLISRQ DLTF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 5e-20 | 15 | 78 | 11 | 73 | RADIALIS |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818796.1 | 3e-38 | protein RADIALIS-like 3 isoform X1 | ||||
Swissprot | Q1A173 | 7e-26 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A2T7DJA1 | 7e-37 | A0A2T7DJA1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J13204.1.p | 3e-39 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |