PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00616.1.g00200.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 367aa MW: 39733.7 Da PI: 11.8311

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00616.1.g00200.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	80.2	1.4e-25	250	299	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+k+ rqv fskRr+g++KKA+EL LCdaeva+++fs+ gklyeyss Zmw_sc00616.1.g00200.1.am.mk 250 RIEDKTSRQVRFSKRRAGLFKKAFELALLCDAEVALVVFSPGGKLYEYSS 299 8***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	28.385	241	301	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.6E-32	241	300	IPR002100	Transcription factor, MADS-box
CDD	cd00265	4.01E-34	242	302	No hit	No description
PRINTS	PR00404	1.1E-25	243	263	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.88E-25	243	304	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.7E-25	250	297	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-25	263	278	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-25	278	299	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MPRACATITP TTRMPRACAT VQQSRRRGGD AARHRTNAED AEGVRDGHAE SKDANDVREA 60 MLRASIALMA RMPTHGPNIL RTVNLVTVRA GSVLGGGLSL RLLSCPALIA VQLRRTRLVG 120 VVIRADERGG ETALITRAEF AALSTHGARD LAGCGHVCLR LLHFLAPVEN LKEPTGGWTG 180 ANSRTNRRMD GSELADQNAR RSSSGTPKIC VDIAPGLDRY GKGRPTRPAG LPAHGSHAAM 240 ARRGPVELRR IEDKTSRQVR FSKRRAGLFK KAFELALLCD AEVALVVFSP GGKLYEYSST 300 RFARFPSSTF RIRRPSALGH RVPCSAGSPW VHGAERLFRL SMGTWLNTRD VAVVGARGSM 360 APRALWA

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MPRACATITP TTRMPRACAT VQQSRRRGGD AARHRTNAED AEGVRDGHAE SKDANDVREA  60
MLRASIALMA RMPTHGPNIL RTVNLVTVRA GSVLGGGLSL RLLSCPALIA VQLRRTRLVG  120
VVIRADERGG ETALITRAEF AALSTHGARD LAGCGHVCLR LLHFLAPVEN LKEPTGGWTG  180
ANSRTNRRMD GSELADQNAR RSSSGTPKIC VDIAPGLDRY GKGRPTRPAG LPAHGSHAAM  240
ARRGPVELRR IEDKTSRQVR FSKRRAGLFK KAFELALLCD AEVALVVFSP GGKLYEYSST  300
RFARFPSSTF RIRRPSALGH RVPCSAGSPW VHGAERLFRL SMGTWLNTRD VAVVGARGSM  360
APRALWA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1egw_A	5e-15	243	300	2	59	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B	5e-15	243	300	2	59	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C	5e-15	243	300	2	59	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D	5e-15	243	300	2	59	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
3kov_A	8e-15	243	300	2	59	Myocyte-specific enhancer factor 2A
3kov_B	8e-15	243	300	2	59	Myocyte-specific enhancer factor 2A
3kov_I	8e-15	243	300	2	59	Myocyte-specific enhancer factor 2A
3kov_J	8e-15	243	300	2	59	Myocyte-specific enhancer factor 2A
3mu6_A	5e-15	243	300	2	59	Myocyte-specific enhancer factor 2A
3mu6_B	5e-15	243	300	2	59	Myocyte-specific enhancer factor 2A
3mu6_C	5e-15	243	300	2	59	Myocyte-specific enhancer factor 2A
3mu6_D	5e-15	243	300	2	59	Myocyte-specific enhancer factor 2A
3p57_A	8e-15	243	300	2	59	Myocyte-specific enhancer factor 2A
3p57_B	8e-15	243	300	2	59	Myocyte-specific enhancer factor 2A
3p57_C	8e-15	243	300	2	59	Myocyte-specific enhancer factor 2A
3p57_D	8e-15	243	300	2	59	Myocyte-specific enhancer factor 2A
3p57_I	8e-15	243	300	2	59	Myocyte-specific enhancer factor 2A
3p57_J	8e-15	243	300	2	59	Myocyte-specific enhancer factor 2A
6byy_C	1e-14	243	300	3	60	MEF2 CHIMERA
6byy_D	1e-14	243	300	3	60	MEF2 CHIMERA

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398