PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00616.1.g00080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 801aa MW: 86870.7 Da PI: 6.5959 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.8 | 1.8e-18 | 29 | 86 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+e+Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Zmw_sc00616.1.g00080.1.sm.mkhc 29 YVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 86 6789****************************************************97 PP | |||||||
2 | START | 172.8 | 2.2e-54 | 177 | 384 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakae 80 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ ++ Zmw_sc00616.1.g00080.1.sm.mkhc 177 IAEETLAEFLSKATGTAVDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVD 254 68999*****************************************************.8888888888********** PP EEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEE CS START 81 tlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgil 153 +l vi +g g+++ ++++++a+++l++ Rdf+++Ry+ l++g++vi+++S+++ + p+ ++++vRae+lpSg+l Zmw_sc00616.1.g00080.1.sm.mkhc 255 VLHVIPTGngGTIEIIYMQTYAPTTLAApRDFWTLRYTSGLEDGSLVICERSLTQSTGGPSgpnTPNFVRAEVLPSGYL 333 **************************999****************************9999999*************** PP EEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS START 154 iepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204 i+p+++g+s +++v+hvdl++++++++lr+l++s + ++k++ a+l++ + Zmw_sc00616.1.g00080.1.sm.mkhc 334 IRPCEGGGSMIHIVDHVDLDAWSVPEVLRPLYESPKILAQKMTIAALRHIR 384 **********************************************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-18 | 14 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.435 | 23 | 87 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.6E-15 | 25 | 91 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.42E-17 | 27 | 90 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.72E-16 | 28 | 88 | No hit | No description |
Pfam | PF00046 | 4.7E-16 | 29 | 86 | IPR001356 | Homeobox domain |
CDD | cd14686 | 1.67E-6 | 80 | 119 | No hit | No description |
PROSITE profile | PS50848 | 27.127 | 167 | 367 | IPR002913 | START domain |
CDD | cd08875 | 8.96E-70 | 171 | 387 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 2.3E-25 | 175 | 367 | IPR023393 | START-like domain |
SMART | SM00234 | 1.2E-46 | 176 | 386 | IPR002913 | START domain |
Pfam | PF01852 | 3.6E-52 | 177 | 384 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.21E-39 | 177 | 387 | No hit | No description |
Pfam | PF08670 | 1.1E-24 | 712 | 796 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 801 aa Download sequence Send to blast |
MAAMVAAGGG KDRSSPGGGG APQVDTGKYV RYTPEQVEAL ERVYSECPKP SSLRRQQLIR 60 ECPILSNIEP KQIKVWFQNR RCREKQRKEA SRLQTVNRKL TAMNKLLMEE NDRLQKQVSR 120 LVYENGYMKQ QLHNPSVATT DTSCDSVVTS GQHHQQQNPA APRPLRDANN PAGLLAIAEE 180 TLAEFLSKAT GTAVDWVQMV GMKPGPDSIG IIAVSHNCSG VAARACGLVS LEPTKVAEIL 240 KDRPSWYRDC RCVDVLHVIP TGNGGTIEII YMQTYAPTTL AAPRDFWTLR YTSGLEDGSL 300 VICERSLTQS TGGPSGPNTP NFVRAEVLPS GYLIRPCEGG GSMIHIVDHV DLDAWSVPEV 360 LRPLYESPKI LAQKMTIAAL RHIRQIAHES SGEMPYGGGR QPAVLRTFSQ RLSRGFNDAV 420 NGFPDDGWSL MSSDGAEDVT IAINSSPNKL VGSHVNSSQL FSAIGGGILC AKASMLLQNV 480 PPALLVRFLR EHRSEWADPG VDAYSAAALR ASPYAVPGLR ASGFMGSQVI LPLAHTLEHE 540 EFLEVIRLEG HSLCHDEVVL SRDMYLLQLC SGVDENAAGA CAQLVFAPID ESFADDAPLL 600 PSGFRVIPLD AKTDPPSGTR TLDLASTLEV GSGGTTRASS DASSTSSTRS VLTIAFQFSY 660 ENHLRESVAA MARQYVRTVV ASVQRVAMAI APSRIGGQLE MKQTPGSPEA QTLARWIGRS 720 YRFHTGAELL RTETPCTDSS LKALWQHSDS IMCCSLKAAP VFTFANQAGL DMLETTLIAL 780 QDISLEKILD EDGRKALCSE T |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982339.1 | 0.0 | homeobox-leucine zipper protein HOX32 | ||||
Swissprot | Q6AST1 | 0.0 | HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32 | ||||
TrEMBL | K4A5S4 | 0.0 | K4A5S4_SETIT; Uncharacterized protein | ||||
STRING | Si034228m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP374 | 38 | 197 |
Publications ? help Back to Top | |||
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