PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00609.1.g00410.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 314aa MW: 34241.8 Da PI: 8.7406

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00609.1.g00410.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.9	3.9e-53	12	137	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtdeel+++yL++kv+++++ + ++ e+d++k+ePw+Lp+ +k +ekewyfF+ +d+ky+tg r+nrat +g Zmw_sc00609.1.g00410.1.am.mk 12 LPPGFRFHPTDEELITHYLARKVADSRFAA-LAVGEADLNKSEPWELPSLAKMGEKEWYFFCLKDRKYPTGLRTNRATVAG 91 79***********************999.67***********8888899********************** PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkatgkdk++++ +++lvg kktLvfy+grapkgek+ Wvmheyrl Zmw_sc00609.1.g00410.1.am.mk 92 YWKATGKDKDIFR-GKALVGSKKTLVFYTGRAPKGEKSGWVMHEYRL 137 *********.99***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-62	6	162	IPR003441	NAC domain
PROSITE profile	PS51005	57.73	12	162	IPR003441	NAC domain
Pfam	PF02365	1.5E-28	13	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MEQDLHQQPM ELPPGFRFHP TDEELITHYL ARKVADSRFA ALAVGEADLN KSEPWELPSL 60 AKMGEKEWYF FCLKDRKYPT GLRTNRATVA GYWKATGKDK DIFRGKALVG SKKTLVFYTG 120 RAPKGEKSGW VMHEYRLHGK LVNGVPKVGS KNEWVLCRVY KKSLAGLVPP PAAAKKGTGE 180 MARTDDMVLA HLPRLMHMSG GATVNPAATH VTCFSDALKG QFFNHAVPQT TATANNGTDH 240 LGLASSPFFA QYGQGVSLVQ LLESNGYDVG LAADAGMPPG LSASQDTGLT SDVNPETSSS 300 SGQKFDHQDQ LWGF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-54	10	162	15	165	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-54	10	162	15	165	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-54	10	162	15	165	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-54	10	162	15	165	NO APICAL MERISTEM PROTEIN
3swm_A	5e-54	10	162	18	168	NAC domain-containing protein 19
3swm_B	5e-54	10	162	18	168	NAC domain-containing protein 19
3swm_C	5e-54	10	162	18	168	NAC domain-containing protein 19
3swm_D	5e-54	10	162	18	168	NAC domain-containing protein 19
3swp_A	5e-54	10	162	18	168	NAC domain-containing protein 19
3swp_B	5e-54	10	162	18	168	NAC domain-containing protein 19
3swp_C	5e-54	10	162	18	168	NAC domain-containing protein 19
3swp_D	5e-54	10	162	18	168	NAC domain-containing protein 19
4dul_A	5e-54	10	162	15	165	NAC domain-containing protein 19
4dul_B	5e-54	10	162	15	165	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004975858.1	1e-152	NAC domain-containing protein 92 isoform X1
Swissprot	Q9FLJ2	3e-89	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A3G1VCF2	0.0	A0A3G1VCF2_9POAL; NAC domain transcription factor
STRING	Si010553m	1e-151	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2730	37	87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]