PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00607.1.g00350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 424aa MW: 45899.4 Da PI: 6.7736 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.5 | 2.1e-10 | 130 | 180 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +g W++eEde+l++ + + G g+W++ + + R++k+c++rw +yl Zmw_sc00607.1.g00350.1.am.mk 130 KGLWSPEEDEKLYNHIIRRGVGCWSSLPLSCVragLQRCGKSCRLRWINYL 180 678***********************997777799**************97 PP | |||||||
2 | Myb_DNA-binding | 51.5 | 2.3e-16 | 186 | 229 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E++l+v +++ lG++ W+ Ia++++ gRt++++k++w++ Zmw_sc00607.1.g00350.1.am.mk 186 RGSFSQQEEDLIVALHEILGNR-WSQIASHLP-GRTDNEIKNFWNS 229 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.4E-19 | 125 | 183 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.552 | 125 | 180 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.52E-27 | 127 | 227 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-5 | 129 | 182 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.7E-9 | 130 | 180 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.55E-7 | 133 | 180 | No hit | No description |
PROSITE profile | PS51294 | 25.408 | 181 | 235 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-25 | 184 | 236 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.1E-16 | 185 | 233 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-14 | 186 | 229 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.56E-11 | 188 | 228 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 424 aa Download sequence Send to blast |
MTGHLTLHRS ITGDRREASR VRACCFRSID SFAVVAGVAK SPRRSIGQGY ACGGQIRSRT 60 VTAGPRAPLD TNGRPPVDLP TREREEEKRE TCGNNHPPET STLRLMCGQL LDPRMGRLSG 120 GVGVQPKLRK GLWSPEEDEK LYNHIIRRGV GCWSSLPLSC VRAGLQRCGK SCRLRWINYL 180 RPDLKRGSFS QQEEDLIVAL HEILGNRWSQ IASHLPGRTD NEIKNFWNSC VKKKLQQRGI 240 DPSTHKPIAG GAGAAEAAAA ALPDQDQDHK PAAEGAAAPK QQVALDPFPV MTDFGGCGFD 300 HLGVANVAAL YGQFDYDVGK ASDAAAGFVA DYSSVLDVSE NLGYGESSSN SSNWNCAEIG 360 SVLDSEVLDW ASGAGVKAEP FTKMVRQHSG GGEVDDDALE HTFALPAGCQ EQSLAHFDFN 420 LEYL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-27 | 126 | 235 | 3 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961344.1 | 1e-148 | myb-related protein Hv33 | ||||
Swissprot | P20027 | 1e-114 | MYB3_HORVU; Myb-related protein Hv33 | ||||
TrEMBL | K3Z860 | 1e-146 | K3Z860_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J19191.1.p | 1e-148 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2327 | 33 | 91 |