PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00607.1.g00350.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 424aa    MW: 45899.4 Da    PI: 6.7736
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00607.1.g00350.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.52.1e-10130180148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                                   +g W++eEde+l++ + + G g+W++ +       + R++k+c++rw +yl
  Zmw_sc00607.1.g00350.1.am.mk 130 KGLWSPEEDEKLYNHIIRRGVGCWSSLPLSCVragLQRCGKSCRLRWINYL 180
                                   678***********************997777799**************97 PP

2Myb_DNA-binding51.52.3e-16186229146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rg+++++E++l+v +++ lG++ W+ Ia++++ gRt++++k++w++
  Zmw_sc00607.1.g00350.1.am.mk 186 RGSFSQQEEDLIVALHEILGNR-WSQIASHLP-GRTDNEIKNFWNS 229
                                   899*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-19125183IPR009057Homeodomain-like
PROSITE profilePS5129411.552125180IPR017930Myb domain
SuperFamilySSF466893.52E-27127227IPR009057Homeodomain-like
SMARTSM007171.1E-5129182IPR001005SANT/Myb domain
PfamPF002499.7E-9130180IPR001005SANT/Myb domain
CDDcd001674.55E-7133180No hitNo description
PROSITE profilePS5129425.408181235IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-25184236IPR009057Homeodomain-like
SMARTSM007176.1E-16185233IPR001005SANT/Myb domain
PfamPF002491.5E-14186229IPR001005SANT/Myb domain
CDDcd001671.56E-11188228No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MTGHLTLHRS ITGDRREASR VRACCFRSID SFAVVAGVAK SPRRSIGQGY ACGGQIRSRT  60
VTAGPRAPLD TNGRPPVDLP TREREEEKRE TCGNNHPPET STLRLMCGQL LDPRMGRLSG  120
GVGVQPKLRK GLWSPEEDEK LYNHIIRRGV GCWSSLPLSC VRAGLQRCGK SCRLRWINYL  180
RPDLKRGSFS QQEEDLIVAL HEILGNRWSQ IASHLPGRTD NEIKNFWNSC VKKKLQQRGI  240
DPSTHKPIAG GAGAAEAAAA ALPDQDQDHK PAAEGAAAPK QQVALDPFPV MTDFGGCGFD  300
HLGVANVAAL YGQFDYDVGK ASDAAAGFVA DYSSVLDVSE NLGYGESSSN SSNWNCAEIG  360
SVLDSEVLDW ASGAGVKAEP FTKMVRQHSG GGEVDDDALE HTFALPAGCQ EQSLAHFDFN  420
LEYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-271262353108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961344.11e-148myb-related protein Hv33
SwissprotP200271e-114MYB3_HORVU; Myb-related protein Hv33
TrEMBLK3Z8601e-146K3Z860_SETIT; Uncharacterized protein
STRINGPavir.J19191.1.p1e-148(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23273391