PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00606.1.g00100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HB-other | ||||||||
Protein Properties | Length: 306aa MW: 33156.4 Da PI: 9.2292 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.7 | 8.4e-08 | 14 | 75 | 7 | 56 |
--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS Homeobox 7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56 f ++++ e+e+ ++ n p ++ + LA+k ++ +qV +WFqNrR+ ++ Zmw_sc00606.1.g00100.1.am.mkhc 14 FLPSEVAEMEARLQQlnNTIPGRDVLQSLADKFtasperagraAIQPKQVWNWFQNRRYSHR 75 55677888888888665888999999******99******999****************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.68E-9 | 12 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.831 | 13 | 77 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.61E-4 | 13 | 75 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.3E-6 | 14 | 79 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.2E-5 | 14 | 75 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MGRPPSSGAP AFRFLPSEVA EMEARLQQLN NTIPGRDVLQ SLADKFTASP ERAGRAAIQP 60 KQVWNWFQNR RYSHRAKSVR PAPPPPPPPS KMAPSGADRL QHATTASAFR AAQTPAAAAA 120 GAHPGSSPAA GTMLLHFCLI GCSSPVTRKY GFVFLDSEQR KMNGSMFVNV CDSVLFHEIV 180 PLRKVCRRPG TNYRLQMFHA SRAAATPSAD VHTPPKQVKK ESASNEKSPA EQKPLKQHKM 240 RDVKTDEVTV VSDHEEAAGN TALPTPSAQA EAHNDSTSDV AMDTDPAPVV EVDDEVQVVD 300 KVKEDK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004956551.1 | 9e-60 | protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
Refseq | XP_022680276.1 | 9e-60 | protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
Refseq | XP_022680277.1 | 9e-60 | protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
Refseq | XP_022680278.1 | 9e-60 | protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
TrEMBL | A0A1D6EP15 | 2e-94 | A0A1D6EP15_MAIZE; Protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
STRING | Si030167m | 4e-59 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4190 | 29 | 48 |