PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00603.1.g00130.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 298aa    MW: 32556.8 Da    PI: 8.913
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00603.1.g00130.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding361.7e-11555146
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                                    ++rWT+eE+  l  +v+++G g+W+tI +          R+  ++k++w++
  Zmw_sc00603.1.g00130.1.sm.mkhc  5 KQRWTAEEEAALRAGVARHGVGNWRTILKDPEfsstlCYRSNVDLKDKWRN 55
                                    79****************************999999978**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.934161IPR017930Myb domain
SuperFamilySSF466896.1E-16258IPR009057Homeodomain-like
SMARTSM007179.2E-8459IPR001005SANT/Myb domain
PfamPF002491.7E-8556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-13556IPR009057Homeodomain-like
CDDcd116603.97E-20657No hitNo description
SMARTSM005264.4E-11120185IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.5E-17120192IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.7E-17120200IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150423.69122190IPR005818Linker histone H1/H5, domain H15
PfamPF005381.0E-10126183IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGVPKQRWTA EEEAALRAGV ARHGVGNWRT ILKDPEFSST LCYRSNVDLK DKWRNMNVVA  60
TASGSREKGR AGVKKTRPAP KNNDQSMTVN TITSDADEEI ADVKPIASLS GEAWNNSNPK  120
KSNSRIDNVI LEAIKNLKEP TGSHRTTIAN YIEEQYWPPS DFDHILSTKL KELTASGKLI  180
KVNRKYRIAP SSPYSEGRSP KMMLLEDVKR EPFKGGLDDS KTLTRAQVDA DLARMLTMTA  240
EEAAAAAARA VAEAEAIMAE AEAAAREAEA AEADAQAAQA FAEAALLTLK NRKLMSQA
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00607ChIP-seqTransfer from AT1G49950Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968284.11e-141single myb histone 5
RefseqXP_004968285.11e-141single myb histone 5
RefseqXP_022682871.11e-141single myb histone 5
SwissprotC0HIA31e-131SMH6_MAIZE; Single myb histone 6
TrEMBLK3XKF21e-139K3XKF2_SETIT; Uncharacterized protein
STRINGSi002372m1e-140(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]