PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00596.1.g00170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HSF | ||||||||
Protein Properties | Length: 366aa MW: 41472.4 Da PI: 4.7549 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 112.5 | 2.8e-35 | 48 | 138 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 Fl+k+y++++d ++++++sws+++nsfvv+d++ fa+ +Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+ Zmw_sc00596.1.g00170.1.sm.mk 48 FLTKTYDMVDDLTTDHVVSWSATNNSFVVWDPHAFATVMLPRHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFA 119 9********************999*****************************************999.........**** PP ESXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 83 hksFkkgkkellekikrkk 101 ++ F +g+++ll++i+r+k Zmw_sc00596.1.g00170.1.sm.mk 120 NEGFLRGQRHLLKNIRRRK 138 *****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 2.18E-35 | 44 | 137 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 4.4E-39 | 44 | 137 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 9.2E-62 | 44 | 137 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.4E-31 | 48 | 137 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-18 | 48 | 71 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-18 | 86 | 98 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 87 | 111 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-18 | 99 | 111 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MDPMLNPVKE EVSHGEGGLL GAAAGDGHGS VAAPRPMEGL QDGGPPPFLT KTYDMVDDLT 60 TDHVVSWSAT NNSFVVWDPH AFATVMLPRH FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN 120 EGFLRGQRHL LKNIRRRKPP AHNAPNQQSV SPYLEVGHFG YDAEIDRLKR DKQLLMAEVV 180 KLRQEQQNTK ANLKAMEDRL QGTEQKQQQM MAFLARVMRN PEFLKQLMSQ NEMRKELQEA 240 ISKKRRRRID QGPEDDDLGA TSSLEQGSPL LFDPPEPADF LVDGIPMDIG NSVLDPEVLA 300 RPENIDLGTS EPQQNVPQGD LNEDFWEELL NEGFAEENDN HVIEDDMNLL SEKMGYLNSD 360 SPTSRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-24 | 46 | 137 | 27 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-24 | 46 | 137 | 27 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-24 | 46 | 137 | 27 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 242 | 247 | KKRRRR |
2 | 243 | 248 | KRRRRI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00371 | DAP | Transfer from AT3G22830 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025799458.1 | 0.0 | heat stress transcription factor A-2b-like | ||||
Swissprot | Q6VBB2 | 0.0 | HFA2B_ORYSJ; Heat stress transcription factor A-2b | ||||
TrEMBL | A0A168T038 | 0.0 | A0A168T038_9POAL; Heat stress transcription factor A2b | ||||
STRING | Si030256m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP308 | 37 | 231 |
Publications ? help Back to Top | |||
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