PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00591.1.g00300.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ZF-HD

Protein Properties

Length: 804aa MW: 86207.7 Da PI: 9.4276

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00591.1.g00300.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	97.6	9.5e-31	384	436	5	58
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 rY+eClkNhA+ +GghavDGCgEfm++ geegt +al+CaAC+CHRnFHR+e+ Zmw_sc00591.1.g00300.1.am.mk 384 RYRECLKNHAVGIGGHAVDGCGEFMAA-GEEGTLDALRCAACNCHRNFHRKESP 436 8***********************9.999******************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	1.0E-27	362	437	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	7.6E-29	384	434	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.4E-28	384	435	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.752	385	434	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.25E-12	522	584	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-23	524	584	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.6E-19	534	584	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 804 aa Download sequence Send to blast
MDHGLASPRC YKTTCWVGTA VRMDSDEHAC HQPGPQSTPT KIANGKQRTP SSRRRPCMDH 60 RHHRSRRMET SDPVSRSRGK DRRITGLAAC GHPRRLPLDP ALTAGLIAPA TVEIRPPPKT 120 SPAGAQACTR VSAVDETHLV ASHAGRMEGA QLACSGEVAC SLPRPHFRCL LFRSGVGDRR 180 EANTVNWTKR TAPVEALPAK IDGAVYSSVT SCVGAKPLEK SSGERDSHAA KKAMSATQRN 240 AISSPVEVSG GREIGQERTK RGLGDERAAP RQNWQPDGVH TLSYLLISLL TLLSRSLSFA 300 CHNSRSQTQE APASCLLASQ AAMDFDDHDD GDEEMAPLPP VLSSSYETPP QSAAFGGGVA 360 PAAKPPSEPG SRANKDPGGG GSGRYRECLK NHAVGIGGHA VDGCGEFMAA GEEGTLDALR 420 CAACNCHRNF HRKESPTAEG SPISPAAIVA YGAMPHQQFS PYYRTPAGYF HHTPHHMAAG 480 HQQRPLALPS TSHSGRDDVD DLSGMAGPMS ALGPLSGMSL GAGPSGSGGS GSGKKRFRTK 540 FTQEQKDRML AFSERLGWRI QKHDEAAVQQ FCDEVGVKRH VLKVILTPPP HSMHPRASAH 600 APPQSSCWIV SMAAIPLRAK LLSLAAEGRR RRRCTGRERQ RCQLSMWKSG TERMEKQENT 660 LSSQLPLGPL PRAIARCHGV LAASAALLIF HLAPLCFEYA RYADAWLDDD GGLFMSGHRV 720 WVGSAEQRGE PSAGAIRGCG RASCLCPQRS AGRGEGLPDC PLGSLHAHLA SRKHAVAVVH 780 VCLLTAGRTR FRDVVLGFFL AKLR

Sequence ? help Back to Top

Protein Sequence Length: 804 aa Download sequence Send to blast

MDHGLASPRC YKTTCWVGTA VRMDSDEHAC HQPGPQSTPT KIANGKQRTP SSRRRPCMDH  60
RHHRSRRMET SDPVSRSRGK DRRITGLAAC GHPRRLPLDP ALTAGLIAPA TVEIRPPPKT  120
SPAGAQACTR VSAVDETHLV ASHAGRMEGA QLACSGEVAC SLPRPHFRCL LFRSGVGDRR  180
EANTVNWTKR TAPVEALPAK IDGAVYSSVT SCVGAKPLEK SSGERDSHAA KKAMSATQRN  240
AISSPVEVSG GREIGQERTK RGLGDERAAP RQNWQPDGVH TLSYLLISLL TLLSRSLSFA  300
CHNSRSQTQE APASCLLASQ AAMDFDDHDD GDEEMAPLPP VLSSSYETPP QSAAFGGGVA  360
PAAKPPSEPG SRANKDPGGG GSGRYRECLK NHAVGIGGHA VDGCGEFMAA GEEGTLDALR  420
CAACNCHRNF HRKESPTAEG SPISPAAIVA YGAMPHQQFS PYYRTPAGYF HHTPHHMAAG  480
HQQRPLALPS TSHSGRDDVD DLSGMAGPMS ALGPLSGMSL GAGPSGSGGS GSGKKRFRTK  540
FTQEQKDRML AFSERLGWRI QKHDEAAVQQ FCDEVGVKRH VLKVILTPPP HSMHPRASAH  600
APPQSSCWIV SMAAIPLRAK LLSLAAEGRR RRRCTGRERQ RCQLSMWKSG TERMEKQENT  660
LSSQLPLGPL PRAIARCHGV LAASAALLIF HLAPLCFEYA RYADAWLDDD GGLFMSGHRV  720
WVGSAEQRGE PSAGAIRGCG RASCLCPQRS AGRGEGLPDC PLGSLHAHLA SRKHAVAVVH  780
VCLLTAGRTR FRDVVLGFFL AKLR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-20	535	584	18	67	ZF-HD homeobox family protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3950	32	69