PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00591.1.g00070.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 271aa MW: 29543.8 Da PI: 4.4352

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00591.1.g00070.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.4	5.7e-19	47	100	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe ++++ e++++LA+ lgL+ rqV vWFqNrRa++k Zmw_sc00591.1.g00070.1.sm.mk 47 KKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWK 100 456899***********************************************9 PP
2	HD-ZIP_I/II	132.9	1.2e-42	46	138	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 ekkrrls eqv++LE+sFe e+kLeperK++lar+LglqprqvavWFqnrRAR+ktkqlE+dy+aL+++ydal+ ++++L+ Zmw_sc00591.1.g00070.1.sm.mk 46 EKKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRHSYDALRLDHDALR 126 69***************************************************************************** PP HD-ZIP_I/II 82 keveeLreelke 93 +++++L +e+ke Zmw_sc00591.1.g00070.1.sm.mk 127 RDKDALLAEIKE 138 *****99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.09E-19	40	104	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.297	42	102	IPR001356	Homeobox domain
SMART	SM00389	2.1E-18	45	106	IPR001356	Homeobox domain
Pfam	PF00046	2.9E-16	47	100	IPR001356	Homeobox domain
CDD	cd00086	6.47E-18	47	103	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.3E-19	49	109	IPR009057	Homeodomain-like
PRINTS	PR00031	9.2E-6	73	82	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	77	100	IPR017970	Homeobox, conserved site
PRINTS	PR00031	9.2E-6	82	98	IPR000047	Helix-turn-helix motif
Pfam	PF02183	4.1E-17	102	143	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MKRPRGGSPS LPPVNNPDDD GYGGVGMEAE GDAEEEMMAC GGGGGEKKRR LSVEQVRALE 60 RSFEVENKLE PERKARLARD LGLQPRQVAV WFQNRRARWK TKQLERDYAA LRHSYDALRL 120 DHDALRRDKD ALLAEIKELK AKLGDEETTA SFTSVKAELA AFDEPPTAGT GSSESDSSAV 180 LNDADPAGAT PPTELPPAPE IQQGTLLGSA TAAVAGTAAA RQAELLFHGS FLKVEEDDTG 240 FLDDDEPCGG FFAVEQPPPM VWWTEPMEHW N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	71	77	ERKARLA
2	94	102	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269\|PubMed:10732669, ECO:0000269\|PubMed:18049796}.
UniProt	Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269\|PubMed:10732669, ECO:0000269\|PubMed:18049796}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269\|PubMed:17999151, ECO:0000269\|PubMed:18049796}.
UniProt	INDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269\|PubMed:17999151, ECO:0000269\|PubMed:18049796}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004957072.1	1e-148	homeobox-leucine zipper protein HOX4
Swissprot	Q6K498	1e-127	HOX4_ORYSJ; Homeobox-leucine zipper protein HOX4
Swissprot	Q9XH37	1e-127	HOX4_ORYSI; Homeobox-leucine zipper protein HOX4
TrEMBL	K3ZW40	1e-147	K3ZW40_SETIT; Uncharacterized protein
STRING	Si030822m	1e-147	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3009	34	82

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]